RNA id: TU24398



Basic Information


Item Value
RNA id TU24398
length 422
lncRNA type intronic
GC content 0.43
exon number 1
gene id G21702
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1162460 ~ 1162881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTAAACACAATCCGCTGTGCCATCTGCAGATGTCAACTAAAGCTCTATCATGCAAAATAGCGTGTTATCAGCGTTCAGATCAAAAGCCAGCATCTCTGATAGTATGGAGGTGCATATGGTATGGGCAGCTTGCATGTTTTGGAAGGCAATATGAATGCTAAAAGGTATATAAAGGTTTTAGAGCAACATATGCTCCCCTCCAGATGACGTCTATTTCGGAGAAGGCCTTGTGTATTTCAGCAGGACAATGCAAAACCACATACTGCAGCTATTACAACAGCATGGCTTCATCGTAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGCAGTCCAGATCTTTCACCTATAGAGAACATTTGGCACATCATTAAACAAAAAATACGTCAAAGATGACCACAAACTCTTCAGCAGCTGGAAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24388 lncRNA upstream 18283 1132913 ~ 1144177 (+) False G21697
TU24392 lncRNA upstream 24774 1132913 ~ 1137686 (+) True G21697
TU24363 lncRNA upstream 32019 1129468 ~ 1130441 (+) True G21674
TU24289 lncRNA upstream 162215 1000012 ~ 1000245 (+) True G21612
TU24287 lncRNA upstream 166218 996039 ~ 996242 (+) True G21610
TU24423 lncRNA downstream 36795 1199676 ~ 1199884 (+) True G21713
TU24424 lncRNA downstream 37936 1200817 ~ 1201074 (+) True G21714
TU24426 lncRNA downstream 41662 1204543 ~ 1204919 (+) True G21716
TU24437 lncRNA downstream 71069 1233950 ~ 1234229 (+) True G21727
TU24438 lncRNA downstream 71694 1234575 ~ 1234788 (+) True G21728
CI01000002_01103311_01128430.mRNA mRNA upstream 33655 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 85889 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 120773 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 375894 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 417705 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_01257892_01258637.mRNA mRNA downstream 94836 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 312045 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 383567 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 487296 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 591587 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
TU23905 other upstream 636663 523007 ~ 525797 (+) True G21272
TU23885 other upstream 682005 479147 ~ 480455 (+) True G21254
TU23870 other upstream 698544 463555 ~ 463916 (+) True G21239
TU24708 other downstream 224733 1387614 ~ 1409057 (+) True G21930

Expression Profile