RNA id: TU24438



Basic Information


Item Value
RNA id TU24438
length 214
lncRNA type intronic
GC content 0.49
exon number 1
gene id G21728
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1234575 ~ 1234788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTGTTGCACCCTTACTATGTGCCTCTTTTCTTTATGAGGTCTTAATAGCGGGTAGCATTAAGAACGAAATATCACCTGTAGTGAATGGCATGGCCTCCTTTCGATCTGAGAGTTTTTTTTTAGGGCTGCCGCTCATCCGAGCTTCAGGTAGTTGATATGTCAGGTGTTCGGCCCTCAGGGGCCGCCCTGATAATCCTCCTGGGTTGCGTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24437 lncRNA upstream 346 1233950 ~ 1234229 (+) True G21727
TU24426 lncRNA upstream 29656 1204543 ~ 1204919 (+) True G21716
TU24424 lncRNA upstream 33501 1200817 ~ 1201074 (+) True G21714
TU24423 lncRNA upstream 34691 1199676 ~ 1199884 (+) True G21713
TU24398 lncRNA upstream 71694 1162460 ~ 1162881 (+) True G21702
TU24439 lncRNA downstream 450 1235238 ~ 1235492 (+) True G21729
TU24448 lncRNA downstream 13710 1248498 ~ 1248732 (+) True G21738
TU24449 lncRNA downstream 14444 1249232 ~ 1249500 (+) True G21739
TU24450 lncRNA downstream 14784 1249572 ~ 1249966 (+) True G21740
TU24451 lncRNA downstream 15369 1250157 ~ 1250602 (+) True G21741
CI01000002_01154239_01172018.mRNA mRNA upstream 61710 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 105770 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 158004 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 192888 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 448009 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01257892_01258637.mRNA mRNA downstream 22929 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 240138 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 311660 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 415389 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 519680 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
TU23905 other upstream 708778 523007 ~ 525797 (+) True G21272
TU23885 other upstream 754120 479147 ~ 480455 (+) True G21254
TU23870 other upstream 770659 463555 ~ 463916 (+) True G21239
TU24708 other downstream 152826 1387614 ~ 1409057 (+) True G21930

Expression Profile