RNA id: TU24449


Basic Information

Item Value
RNA id TU24449
length 269
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G21739
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1249232 ~ 1249500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTTTTGACCAACTTAAGTAGGACTTGAGTCCTACTCTTTATTATGTAATTTCATAATTACTTCTGTTGTCTTTGAGATTTGATATTTATGGTAAACTTTATGGTATTTATGGTATGTTATACTTTAATGTCATTTCTATTGAGACTTGTATGTCATGTATTTAAATATATTTGTAATTACACATCAGTCATGAAAATTGTACTTTCTTTAAGTATACTGCCATAATGCCAGCCTGTGTCCCATACCTTACAAATACATGACCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24448 lncRNA upstream 500 1248498 ~ 1248732 (+) True G21738
TU24439 lncRNA upstream 13740 1235238 ~ 1235492 (+) True G21729
TU24438 lncRNA upstream 14444 1234575 ~ 1234788 (+) True G21728
TU24437 lncRNA upstream 15003 1233950 ~ 1234229 (+) True G21727
TU24426 lncRNA upstream 44313 1204543 ~ 1204919 (+) True G21716
TU24450 lncRNA downstream 72 1249572 ~ 1249966 (+) True G21740
TU24451 lncRNA downstream 657 1250157 ~ 1250602 (+) True G21741
TU24459 lncRNA downstream 23373 1272873 ~ 1273171 (+) True G21749
TU24662 lncRNA downstream 122255 1371755 ~ 1372552 (+) False G21911
TU24672 lncRNA downstream 122255 1371755 ~ 1372442 (+) False G21911
CI01000002_01154239_01172018.mRNA mRNA upstream 76367 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 120427 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 172661 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 207545 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 462666 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01257892_01258637.mRNA mRNA downstream 8217 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 225426 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 296948 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 400677 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 504968 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
TU23905 other upstream 723435 523007 ~ 525797 (+) True G21272
TU23885 other upstream 768777 479147 ~ 480455 (+) True G21254
TU23870 other upstream 785316 463555 ~ 463916 (+) True G21239
TU24708 other downstream 138114 1387614 ~ 1409057 (+) True G21930

Expression Profile