RNA id: TU24451



Basic Information


Item Value
RNA id TU24451
length 446
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G21741
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1250157 ~ 1250602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCTCAGACAGTCTGTCTGCCCTTCTTAAACAATATAAGACGAGAACAGAGGCATCTGAAGCAGAAGTAAACACCTAAGGTTGTGACAGTGGGGTGGTAATAGTGTTGGGCAGCTTTGGACCAGCTGAGCTAAACTAGAACAGATGGGACAAACGGCTGGTGGAAGGTGAGATCTTAGACTGTCGGGAAGCAAGAAATGTTTGCTCTCCCACAGGTTATCTATCAGCCTATAAGGAGTGGATTATAAATAGATGACTTTGCTTTCTCAGTGCAACACAGAGTGCATTTTGCTTTACTTAGGAGCACAACACAATGCATTTAGACAGCTCTTTCTGCTCGCTAGTGCTCAATAGCAACAGAAAGATGTATAATGGCCTTGTGTGCATAAAAAAAAGAACACTGGCTTTTAAAAATGGTCTTAAAGGGATAGCTCACCCAAAAATGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24450 lncRNA upstream 191 1249572 ~ 1249966 (+) True G21740
TU24449 lncRNA upstream 657 1249232 ~ 1249500 (+) True G21739
TU24448 lncRNA upstream 1425 1248498 ~ 1248732 (+) True G21738
TU24439 lncRNA upstream 14665 1235238 ~ 1235492 (+) True G21729
TU24438 lncRNA upstream 15369 1234575 ~ 1234788 (+) True G21728
TU24459 lncRNA downstream 22271 1272873 ~ 1273171 (+) True G21749
TU24662 lncRNA downstream 121153 1371755 ~ 1372552 (+) False G21911
TU24672 lncRNA downstream 121153 1371755 ~ 1372442 (+) False G21911
TU24666 lncRNA downstream 121458 1372060 ~ 1372442 (+) True G21911
TU24691 lncRNA downstream 128746 1379348 ~ 1379757 (+) True G21919
CI01000002_01154239_01172018.mRNA mRNA upstream 77292 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 121352 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 173586 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 208470 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 463591 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01257892_01258637.mRNA mRNA downstream 7115 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 224324 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 295846 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 399575 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 503866 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
TU23905 other upstream 724360 523007 ~ 525797 (+) True G21272
TU23885 other upstream 769702 479147 ~ 480455 (+) True G21254
TU23870 other upstream 786241 463555 ~ 463916 (+) True G21239
TU24708 other downstream 137012 1387614 ~ 1409057 (+) True G21930

Expression Profile