RNA id: TU24666


Basic Information

Item Value
RNA id TU24666
length 383
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G21911
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1371755 ~ 1372552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGTCAACCGGATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACACGACCACAACGCAGCCCTGAAGTATCAGCAGAGATTGAGTCAACTAGATCATCCCCTGTGAAGGCCTCATCGACACGACAGCCACGACACAGTTCCTCAACAACCGTCCATACCGGCGTGATGAATACGATCCTCAATTGGATGGAACTGAAATAAATACTTTTAATGTTGCGATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGCACTGTTGGCCAGAGGAGAACTGGCACCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGCCACCTGATGTCACCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24459 lncRNA upstream 98889 1272873 ~ 1273171 (+) True G21749
TU24451 lncRNA upstream 121458 1250157 ~ 1250602 (+) True G21741
TU24450 lncRNA upstream 122094 1249572 ~ 1249966 (+) True G21740
TU24449 lncRNA upstream 122560 1249232 ~ 1249500 (+) True G21739
TU24448 lncRNA upstream 123328 1248498 ~ 1248732 (+) True G21738
TU24691 lncRNA downstream 6906 1379348 ~ 1379757 (+) True G21919
TU24699 lncRNA downstream 8238 1380680 ~ 1380950 (+) True G21921
TU24700 lncRNA downstream 8687 1381129 ~ 1381338 (+) True G21922
TU24705 lncRNA downstream 13847 1386289 ~ 1386526 (+) True G21927
TU24720 lncRNA downstream 55493 1427935 ~ 1428276 (+) True G21942
CI01000002_01257892_01258637.mRNA mRNA upstream 113423 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01154239_01172018.mRNA mRNA upstream 199195 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 243255 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 295489 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 330373 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01474926_01477596.mRNA mRNA downstream 102484 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 174006 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 277735 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 382026 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
CI01000002_01821988_01829384.mRNA mRNA downstream 449314 1821756 ~ 1829430 (+) True CI01000002_01821988_01829384
TU23905 other upstream 846263 523007 ~ 525797 (+) True G21272
TU23885 other upstream 891605 479147 ~ 480455 (+) True G21254
TU23870 other upstream 908144 463555 ~ 463916 (+) True G21239
TU24708 other downstream 15172 1387614 ~ 1409057 (+) True G21930

Expression Profile