RNA id: TCONS_00012995


Basic Information

Item Value
RNA id TCONS_00012995
length 5856
RNA type mRNA
GC content 0.49
exon number 21
gene id XLOC_006748
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33155428 ~ 33207424 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGTCCTGGCTGGGAGGGCTGGGCTCTGGCCTGGGTCAGAGTTTGGGTCAGGTCGGGGGAAGCTTGTCTTCATTTACTGGACAGATCTCTAATTTTACCAAAGATATTCTGCTGGAAAGCGCCGAGGAAGTGGGAGATGCTGCCTCTGAGCTGCAGGTGTCCAACTCTAGATTGCATGAACTGGAATCTTCATATACTGCACAAAGATCTGAGTACGATCGCTTGCGAAGAATAAACTCAGAGCTAGAGGAGAAGCTAGAAGCGGCTGAGATTCAGGTCAAACAGCAGTCAGTGGAATACAGAACACTCCTGCAGCAGAAAGAGgTGGAGATCAGTCACCTCAAGGCCCGTCAGAGTGGTCTGCAGGAGGAGGTGCAGAAACTCCAACAGCGGACTCAGACTGCGATCAACTCATCCTCCCATGATGCAGCTGTGCTTCCTGTCACCACTGCTGCTACTACCACTACTTCGTCTTCCTTTCTGCACCAATCCTCTGCTGTCCATCAAGGCTTTCATAGTGACGAGGTGGATCTCAGTGATGTCCTGTGGTCACAGCAGGAAATTAACCGTCTTTCCAATGAAGTGCATCGTTTAGAGGCAGATGTTTCTCATTGGAGGAGGGTTGCTCAGGTGTCCAAGCTGCCAGGAGCTGATGGAAACGGAGACCAGGGTGAAGTTTTGAAAATGCAAAGAATTATCAAGGAGCTGAGAGACAAAATGGCACGGGAGGTGGATGAGCACCAGCACGAACTGGCAGCATTGCAGGATGCCCAGAGGCAGAAAATGTCTGACATCTCCAAAAGGCACAGACAGGAGCTGGCAGAGTATGAGGAGAGAATTGAAGAGCTTGAGGAGCAGCTTCAAAGTGAAGGTGGTAATGCTGTCCAAAAATCATCCACAATGCAGGACTCCATTAAACTTCAGGAGCTGGAATCGACTATACGTTCTTTACAGGAGGAGGCGGAGCTTCAGCGCAAACAGCACAGAGAGCTATTGGCCACCTTAGAGGAGGCGGAGCATCATAAGACCAAGTtagagagggagaaagaggagGCAACAGCAGAAAATGCAGAACTGTTGCAGAATTACAGTCGGCTTCAGAAATCTGTGAATGAACTTCAGGCTCGGGTTCAGGAACAGGAGGGGAAGTCAATGTTGAAAGCCCAGCATGATAATGAAATACAAGTCCTAAAAAAAGCCCTTGCAGgTGCGGAGAAAGAGGTTGCTAGACTGAAGAGTTTCAGTGAGCTTGTGTTACTTGATAGAATAGCCCTGGTTGAGGAGAGACACCGGTCTGGAGAGCCAGAGAGTGTTGGAGAGCTGTCACTGGAAGTTTCAGACCTAAAGAGCCAGCTTGACCAACGAGAGGAAGCTCTAAAGCAAGCACATCTTGATATAGAGACACTTACTGCTGAACTGGAAGAACTGGACAAACAGAACCAGGAGGCCACACAGcATGTTATTGCAGTGAAGGACCAGCTGTCCCTGCAAAAAACCCAGACTGAGGCCGAAAAAGCTCGTCTTCAGTCAGACCTCAATTCCTTACTTGACCAGAGACAGTCTCTTCAACTGGAACTGGAAGCCCATGTAGAGAAACTAAGTCAAAGTGCCTTCTCCCTAAATGAACTGCACATGGCAAAGCAGCAGCTCGAAGCTACAGTAAAGGAGTTGAGGGAAAAGTTGTGCAAGTCCCAGGATCTGGGCAAAGAGTTGCGGCAGGAGTCCTCTGAGCTCAAGAGAGCGCTTCAGCAGAGAGAGACAGAACTTACTGCACTTCATGAGGAGTTAAGCCATACAGGGGAGCAGAGGAATGAGTTAGAAGTGCACAGGAAAATACTTGAGGCACGGGATAAAGACATCCATGACTTAAAAGCAGAGTTGGCAGAAGTGAAGGTCTCTTACGAGAGGGCCGTTTCAGAAGACTTTGAATTGAAAATTGATAATAGAAAGTTGACAGAAGAAAGGACTCGGACTTTAGAAAAGACGGACAGCTTGGAAAGGCATATCCAAGAATGTCAAGCTTCTCTAAGCAGGATGTCTCTCGAGAAAGACACCCGTATTGAGGCCTTGAAATTAGAAAAGAGCCAGCTAGAATCTGAGCTAAGTCAGACTGAGAAGCGACTGTCAGATCAGGCTAAACAATATCAACAAACTATTGATGAACTGACCAGAGCACGTTCCATGGATGCTTCTGCACTGCAGACCGAACATGAGCGAATGGTGAAACTCAATCAAGAAAAGGATCTCACAATTTCAGAGCTTAGGCGTGAAATAGAGCAGATGATCTCAGACCAAAAAGACACCAGCGAGATGTTGGACATAACAGTGGCTGGCCAAAATCAACTCACTGAGCTTCTCCAGGAGAAGGATGCTTTTGCAGAAACCCTAAAAACTCAAGCTGTGGAAACACAACAAGAGTTGGAGACCCGTATCTTGAGAGCAAGTCAAGAGTGTGACTCTCTCAGAAAGTCAGTGGAAGAGAAAGACAAACAGCTTGGAGCCATGAAGGAAGAAAACAGCCATTTGAAAGAAGAGATTGACCGTCTGAGGGACCAGCAGAGCAGACCACAGTTAATGTCAGAGCCACGGACACTGGATATCATCACAGAGCTTGAGAATGAGGTCGCCCAGCTCAAAGCTGCCAGAGATCAACTCAAAGAAGAGGTCCAAGCTCTGAGGAGACTTTCTGAAGAACAACAGACAACAGCCCTGCAGTCTCAACGCTCCCTTCAAAGTGAACTAGAGCAAGCACGGTCAAGAAACGAGCAAAGCGCACTCAATTACGAAAGACTCATCAGTGCTAAAGATGAAGAGATTGCCCGGCTTCAGTCAGAAGTAGAGGGCCTAAGCACACAAGGACGAAGTCAAATACAGTCCGTGGAAATTCTACAGGAAGATAAGACCCAGTCTCTGAATGGTGAAAACGGTAATGAGAAACATGACCTGTCAAAGGTGGAAATTGAGAAACTTGTGAAAGGCATCAAGGAGAAGGAGACTGAAATTAACCAGCTCAATGAAAAGAACCTCTGTCTAACCAAGCAGCTGGACCAACTTGTAGTATCTCAAAATGAGCTGGGAAAACTCTCACAGATGGTGCGCCAGAAGGATCTAGAAATCCAAGCGCTTCATGCTCGAGTGTCTGGAGGCCATGGTCAAGATGTGGTGTTCCTTCAGCAGCAGCTGCAGGCGTATGCGGTGGAACGGGAACAGGTGCTGGCTGTACTCAATGAGAAGACCAGAGAGAACAGTCAGCTGCGCTCAGACTACCATCGCATTATGGACATAGTTGCTGCCAAGGAGGCAGCCCTGTTAAAGCTTCAGCAAGAAAACCAGCGGCTCTCCACCATGAGCGACCCTTCAGGGAGTCAAGAGATGTTTCGAGAGACCATTCAGAACCTCTCCCGCATTATCCGTGAGAAAGACATCGAGATCGATGCCttgacacagaaatgccagaCCCTGGTTTCTGTCCTCCAAACATCTGGCTGCAGTGATCCTGTGAGTGGTGGCTCTGGAGGTGTTAGCAGCAACCAGTTTGAGGAGCTCCTACAGGAACGTGACACTCTCAAACAGCAAGTTAAAAAGATGGAGGAGTGGAAGCAGCAGGTGATCACGACCGTGAGGAACATGCAGCATGAATCTGCACAGCTGCATGAGGAGCTGCTCAAGCTGCAGGGGCAGGTTTCTGCCGACAGTGACTCAAGCTCGAAGCTATCTGTGGATTATGCCAGGCTTATTCAGAGCTATGAGCAGAAAGAGAAAAAGCTTGGATTGTTGAGTCAAGAGCTGGCACAGGTGCAGCAGACCATCAGCCAGCTGACCAGTACCAAAGACGTTCTCCTCGGGAAGCTTGGCAGTGTCAAGCAATCTCCAGAATTGTCTGCCATGGTTCCTAGCCAGGCTCTTGCCCCTTCAAACCTGAGGGGGGCAGCACCTTCAGCCCAAGATGACCATATACATCAGGATATGCAGGCATTGCAGAGAACTTTAGCAGAGAAAGAGAGCATGATAAGAACTTTGCAGGAAAACAATCATCGCTTGTCAAATTCTGCATCTCTGTCTGAAAGTGAGCAGAGAAGCCATGCAGAGGAGCTCAAGCAAGCTAGAGAGAAGCAAGAATCTTTGCAGCGTTCCCTCAGAGAGAAAGATCTACTCATTAAGACTAAAGGGGACCAGCTCGGGCAGGTGAGTGAGACTTTACGCAACCGTGAGAACGACAATGAAGTTTTGAAGCAGGCTGTGACAAACCTGAAGGAACGTGCGCTGATCCTGGAGTTGGATGTGAAGAAACTGAAGGATGAGAATGAAGCGATTGCATCCAAAGCTCGTGAGAAAGAGACAGAGTTTCGTGCTCTGCAGGAGACCAACATGCAGGTGTCACTGTTGCTTCGGGAAAGAGAGTTTCAGTTCAGTGCTGTGAATGAGAAGGCCACTGCCATGGAGAAGATGTTGAAAGATAAAGAGCAGGGTAAATCTGGTGAGCTGAACCAGTTGTTAAATGAAGTTCGGTCCATGCAGGAGAAGGCAGTGTTGTTTCAGCAAGAAAGAGATCAAGTGATGATGGCCCTCAAACAGAAACAAATGGAGACATCTGCACTGCAGAGCGAGCTCCAGCATACTCGCGATAAAGAGCAGCGGCTGAAGCAGGAGGTGGAGAGATTGCGCAATCACCTGTTAGAGATTGAGGATTCATACACACGGGAGGCTTTATCAGCTCAGGACAGAGAGGCAGAGCTGAGACGCAGAGTAACGCTGCTGGACGAGCGGCTCACGTCGTCCTCTAATGCCGTGGAGAGTGCAAGtcaaCAGGCAAGCTTTCAGGTGGAGTCTCTTCAGGAGCAGCTGAACGGTGCTGTCAGACAGAGAGATGAAGCTCTTATTCAGCTCCGAGCTTCTCAAGATCAGGTCAACCAGTATGCAGTGTCACTCTCTAACCTGCAGATGGTGCTAGAGCAGTTCCAACAAGAAGAAAAAGCCATGTACTCAGCAGAACTGGAAAAACACAAGAGAGAGAAAATGGAGTGGAGAAATAAAGCAGAAAGTCTTGAAGAAATTGCGGCTGCTCTTCGAATAAACCTGGATGAAGCGAACGCAGCTCTAGAATCTGCCTCTCGCCTCACTGACCAGCTGGACCTCAAAGATGAGCAGATAGAAGACCTGAACAAACAAGTGGAAGTGAGACAGGAGATGTTGGAAGAGGCTCAGAGGAAACTCATGAACCTCCTGAACACCACTGAAGGCAAAGTGGATAAGGTTTTGATGAAGAATCTTTACCTGGGCTACTTCCACACCCCCCAAAATAAGCGTGGCGAGGTGCTGAGGCTTATGGGTAATGTGCTTGGCTTGGACCGAGATGAGGTGGGCCAGTTGTTAAAGGAAGAGGTCAAGAGTGGGATGACTGGATGGGTCTCGAGTTGGCTGGGTGGCAGAGCTGTTCAGAGTGTACCAAACACCCCTCAAAGGCCAACGCAAGCACAGAGCCTCAACTCGTCTTTCTCTGAGATGTTCGTGAAGTTCCTGGAGGTAGAGTCTTCCCCTGCACTTCCTGCCCCAAAACTTCCTATGTATGACATCAAGCCCCTGAGTGCGCCCCCTCCTGGCCGGAGTACCGCTAACACACCTGCATCAGGTGTTTCAGGCCCAGGTAAGCGCAGCGGGGATTCAAACCCCTTCCTTGCGCCCCGCTCTGCAGCCGTACCTCTCCTCAATCCCACAGGCGCAGGCAGCACAGCTGGTGCGGGGGGGCACCTGCTAATGAAGCCCATCTCGGACGCCCTGCCCACCTTCACACCCGTACCTGTGTCTGCTGAGGCCAGCGGTGGAGCTGTGCTGAAAGATTTACTCAAGCAGTGA

Function

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-9833 Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi organization and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be active in Golgi apparatus. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hypochord; and nervous system. Human ortholog(s) of this gene implicated in achondrogenesis type IA. Orthologous to human TRIP11 (thyroid hormone receptor interactor 11).

Ensembl:

ensembl_id ENSDART00000182741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 165621 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 178764 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 367619 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 552737 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 555134 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 53707 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 53707 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 53707 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 53707 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 57239 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012992 mRNA downstream 4527 33155428 ~ 33170733 (-) False XLOC_006748
TCONS_00012991 mRNA downstream 21371 33141279 ~ 33153889 (-) True XLOC_006747
TCONS_00012990 mRNA downstream 40649 33123484 ~ 33134611 (-) True XLOC_006746
TCONS_00012988 mRNA downstream 60326 33066605 ~ 33114934 (-) False XLOC_006745
TCONS_00012998 mRNA upstream 3590 33211014 ~ 33227411 (-) True XLOC_006749
TCONS_00012999 mRNA upstream 22022 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00013000 mRNA upstream 44297 33251721 ~ 33256667 (-) True XLOC_006751
TCONS_00013004 mRNA upstream 107249 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013005 mRNA upstream 107251 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00012961 other downstream 580040 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1480213 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1528254 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1595696 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1734320 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 404279 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 452284 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1431205 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1436726 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1975570 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

//