RNA id: TU24721


Basic Information

Item Value
RNA id TU24721
length 429
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G21943
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1428964 ~ 1429392 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTAATAATTGCTCCCACAGTTGATTTCTTCACACCAAGCTGCTTACCTATTGCAGATTCAGTCTTCCCAGCCTGGTGCAGGTCTACAAATTTTGTTTCTGGTGTCCTTTGACAGCTCTTTGGTCTTGGCCATAGTGGAGTTTGGAGTCTGACTGTTTGAGGTTGTGGACAGGTGTCTTTTATACTGATAACGAGTTCAAACAGGTGCCATTAATACAGGTAACGAGTGGAGGACAGAGGAGCCTCTTAAAGAAGAAGTTACAGGTCTGTGAGAGCCAGAAATCTTGCTTTTTTGTAGGTGACCAAATACTTATTTTACAAAGAAATTTACCAATTAATTCATTAAAAATCCTACAATGTAATTTCCTGGATTCTTTCCCCCATTCTGTCTCTCATAGTTGAAGTGTACCTATGATGAAAATTACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24720 lncRNA upstream 688 1427935 ~ 1428276 (+) True G21942
TU24705 lncRNA upstream 42438 1386289 ~ 1386526 (+) True G21927
TU24700 lncRNA upstream 47626 1381129 ~ 1381338 (+) True G21922
TU24699 lncRNA upstream 48014 1380680 ~ 1380950 (+) True G21921
TU24691 lncRNA upstream 49207 1379348 ~ 1379757 (+) True G21919
TU24723 lncRNA downstream 3733 1433125 ~ 1433334 (+) True G21945
TU24724 lncRNA downstream 3977 1433369 ~ 1433612 (+) True G21946
TU24809 lncRNA downstream 55670 1485062 ~ 1485316 (+) True G22022
TU24835 lncRNA downstream 93030 1522422 ~ 1522715 (+) True G22048
TU24855 lncRNA downstream 157351 1586743 ~ 1646258 (+) True G22067
CI01000002_01257892_01258637.mRNA mRNA upstream 170327 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01154239_01172018.mRNA mRNA upstream 256099 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 300159 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 352393 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 387277 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01474926_01477596.mRNA mRNA downstream 45534 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 117056 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 220785 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 325076 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
CI01000002_01821988_01829384.mRNA mRNA downstream 392364 1821756 ~ 1829430 (+) True CI01000002_01821988_01829384
TU24708 other upstream 19907 1387614 ~ 1409057 (+) True G21930
TU23905 other upstream 903167 523007 ~ 525797 (+) True G21272
TU23885 other upstream 948509 479147 ~ 480455 (+) True G21254
TU23870 other upstream 965048 463555 ~ 463916 (+) True G21239

Expression Profile