RNA id: TU24835


Basic Information

Item Value
RNA id TU24835
length 294
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G22048
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1522422 ~ 1522715 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGACTCCTGGGCTGGAGTGGGCTTTGGAGTGAACTCCTGGGCTGAAACAGGTTCTGGAGCAGACTCATGGGCTGAAGCAATTGTAACTGTGTAACTACAGCATTTGTTACAAAAGGACACTCTGCTTGTTACACACACAGGGACGTGCAGCAGCACACAAACATTTTTAAATATTAAAAATAAAAGGATTCCTCTCTGGAGAAGCGTTCAGTCTTTCCGCTTGCAAATTCCGCCATGTAAATAGTGAATCCGCCATGGTGTGAGTGCAGCTGGCTTTTAAAGGGAATGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24809 lncRNA upstream 37106 1485062 ~ 1485316 (+) True G22022
TU24724 lncRNA upstream 88810 1433369 ~ 1433612 (+) True G21946
TU24723 lncRNA upstream 89088 1433125 ~ 1433334 (+) True G21945
TU24721 lncRNA upstream 93030 1428964 ~ 1429392 (+) True G21943
TU24720 lncRNA upstream 94146 1427935 ~ 1428276 (+) True G21942
TU24855 lncRNA downstream 64028 1586743 ~ 1646258 (+) True G22067
TU24916 lncRNA downstream 169531 1692246 ~ 1692450 (+) True G22100
TU24917 lncRNA downstream 170207 1692922 ~ 1693394 (+) True G22101
TU24884 lncRNA downstream 324423 1847138 ~ 1849864 (+) True G22081
TU24927 lncRNA downstream 344929 1867644 ~ 1868138 (+) True G22110
CI01000002_01474926_01477596.mRNA mRNA upstream 44509 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01257892_01258637.mRNA mRNA upstream 263785 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01154239_01172018.mRNA mRNA upstream 349557 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01103311_01128430.mRNA mRNA upstream 393617 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 445851 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01546448_01547246.mRNA mRNA downstream 23733 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 127462 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01755342_01805760.mRNA mRNA downstream 231753 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
CI01000002_01821988_01829384.mRNA mRNA downstream 299041 1821756 ~ 1829430 (+) True CI01000002_01821988_01829384
TU24708 other upstream 113365 1387614 ~ 1409057 (+) True G21930
TU23905 other upstream 996625 523007 ~ 525797 (+) True G21272
TU23885 other upstream 1041967 479147 ~ 480455 (+) True G21254
TU23870 other upstream 1058506 463555 ~ 463916 (+) True G21239

Expression Profile