RNA id: TCONS_00012998


Basic Information

Item Value
RNA id TCONS_00012998
length 2933
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_006749
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33211014 ~ 33227411 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCACTGTTGTTATGGGTCCTTTATGTAGTTCCTGGTCCACGTCGGTCTGGATCAGAATGAGAAACGGGATAAACAGTCACCGATAATTGATCAAGATTCCCGTAGACACAGTTTCACCTGATATTCTCCCAAAAAATGCATATGGAAGATTTATTTAACGCATTCTGAGAGATCGGAGCCCCATACAGAGGATCTCAGGATGTCTTGGTTTGTTGATCTTGCCGGGAAGGCAGAGGACTTCCTGAATAAAGTGGACCAGGGTGCAGCCACTGCTTTGACAAAACCCAATCAGAAGTCCTCTCTGTCCTACAATAGCCCAGATGCTACCGATTCAACCCAGTATAATGCTGCAGCTTACAGCTCCACCCAGCAGCACCGAGACTCCATCTCTGCCTCGTCCCAAGGAACTTCCACATTCATCTCCGCAGCTGCTGGGAACATAAAGAAATCCAAAGCTACGGTTTTGGCTGGAACAGCAAACGTTTCCAGCACCACACCTTTGGGTTCCAGCAGCAAGGCGTCATCCAATTTTGTGAGGCCTAGAAAGAGTGAAGTGAACGAcgatttgctttttgacttcttaAACAGTTCAGATCCACCACAGAGCGAGAAAAAGGAAGTCAGGAGAGAAACCGTGTCGAAAGCTTTTCGCCCTACAGGGGTGTCAGCACAGAGCCAGATGCCCACTGTCTCTTTGGCCAGTGATCTGCACACAGGCCCATCGGTCACTCCGACCCCGTCGTCCACACAGGGTCTGTCCAGAAACTCTAGCCTCGGCTCTCTCTCCAACAGCTCGCACAGCGTTAAAACCGAGGACAGCTCCACTCGCGACCAAAGCCAAGCTGATGTTCCAGAGAGTTTGACTGCAGGACTGGATGATCTCGCAGATCCTCAGCCAGTGCTGGAAATTCAATCTCAAGATcttcaacagcagcagcagcagcaaggCCAAGAGCATGTGATCTCCAACCTTCGTCTCGAAAACCAGCTTCTGCGTAATGAAGTCTCCTCTCTCAACCAGGAGATGGCCTCGCTAATCCAAAGAGCCAAAGACATGCAGGAAGAGGTGAATCTCGGCAGAGCTCGTGCTGACAAGTGGAATTCGGACCAGTCTCGGGTTGATCGCACGGTTCGAGAACTTAGCTCACAGGTCGATGACCTCACAGAAGCCTTGTCAGCAAAAGACGGTCAGTTGGCGGTCTTGAAAGTGCGACTGGACGAAGCAGATCAGTTACTGAAGGCCCGAAGTTCTGCTCTTGAAGAAGCACAGAACGAGAGAGTCAGgattCTTCAGGACCACAGTGAGGGCAGCAGTCTTCACTCGCAGGCTGTACAGACACTACAGGATAGGTTAAGAGACGCAGAGGCTGCAGTGAAGAGAGAACAGGAGAGCTACAGACAGATACAGAGTGAGTTTGCGGCACGACTTGCGAAAGTGGAGGCCGAGCGTCAGACGCTGGCAGAGTCTTTAACAAATGCCGAGCGCCGGTTAACTGAAGAGAAACAGAGAGCTGAGGATCTTCAGCAACAGGCCAAAAGCTCCCGATCTGCTGCAGAGTACACCAGACAAGAGCTCCAGGACTACAAAAACAAAGCCTCGCGCATATTACAGTCTAAGGAGAAGCTGATCAACAGTTTGAAGGAGGGCTCAGGTCTAGAGGTGCTGGAGGGAGCTGGCGCTGGGGTTGAACTTGAAGAGCTGCGTCATGAAAAAGAGCTACAAAGAGAAGAGATTCAGAAGCTACAGGCACAAATACAGAGCTTGCGGACAGAGATACAGGATCTGGAAACCCAAGCGCTCACTGAGAACGAGAGCTGGAGAGAACAGCTGGCAGAGGTACAGGAACAACACGCACAGCAGATCAGAGCCAAACAGGAAATAGAGGCAGAACTGGAGAGATCCAAACAGGAACTGCAGTACATTGAGGAAGAGCATCACCGCACTAAAATTACCCTTCAGGGTCGCGTCAAAGACAGAGAAGATGAGATCCAGAAGCTTAGAAATCAGCTGACCAATAAGGCTCTGAGCAACAGCAGTCAGGCGGAGCTGGAGGGTCGTCTGCACCAGCTGACGGAGACTCTGATTCAGAAGCAGACCATGTTGGAGGCTCTGGGCACGGAGAAAAACTCACTGGTTTTTCAGCTGGAGAGGCTAGAGCAGCAGCTGAAGAGCCTGCAGGGTGGACAGAACAGCGCGTCGCACATTAACATGGCGGCCATGGAGGGACCAGGTGCTAGGCAGAGGAACACACCAATATTGTTTAGTGATGGGGATGGCCCGGTTACAGGGGTGTATGGGAAGGTTCGCAAGGCAGCCAGCACCATCGACCGCTTCAGTATACGTCTAGGAATCTTTCTAAGACGTTACCCCATGGCCAgggtatttgttattatttatatgGCACTTCTACACCTTTGGGTGATGATTGTCCTTTTGACGTACACACCAGAGATGCACCACAGTCATCCTGATGGAAGATGAAGGACTTCCAATCTGTATTAACAACTAAGAACCTGTTGTGATCAGTAAAAGTTAATAAAGGTGATACTTCAGGCTGCTGTACAGTGGCTCAATATGCATTCATCTACAATTTGCACAGACATGCTGCTGGGTGGTTTTCTCCTTTTCTCTCTCATTTGTTACGCTGTTTCTCATGCGTTTCTTCTTAATCCACTGCATCTTTGTCTGTCTTGGCTCGTATGTGTCTGAAAGCTAAAAGTTTATTGCGAGTGAAGAGAGTGACATGAAGAGAAATATTTAAGGTGTAATTTAAAGGTGTGGTTTTAATCGGTTTAAGAGTTCTCCTTTTCTTTTATTCATCTCCATTTCATGCGgatgtaatcatgattatttttgtTACAGCAAATAACAGATTGTATTCCTTACACTGAAAAGCGGATTTATCTGAATAAATATTAACACAGACATAA

Function

GO:

id name namespace
GO:0000301 retrograde transport, vesicle recycling within Golgi biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0007030 Golgi organization biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031985 Golgi cisterna cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2749 Predicted to enable protein homodimerization activity. Predicted to be involved in Golgi organization and retrograde transport, vesicle recycling within Golgi. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cisterna and Golgi membrane. Is expressed in axis; hatching gland; notochord; and polster. Orthologous to human GOLGA5 (golgin A5).

Ensembl:

ensembl_id ENSDART00000057386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 201375 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 214518 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 403373 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 588491 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 590888 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 33720 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 33720 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 33720 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 33720 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 37252 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012993 mRNA downstream 3590 33170350 ~ 33207424 (-) False XLOC_006748
TCONS_00012995 mRNA downstream 3590 33175260 ~ 33207424 (-) False XLOC_006748
TCONS_00012997 mRNA downstream 3647 33199929 ~ 33207367 (-) True XLOC_006748
TCONS_00012996 mRNA downstream 12864 33196801 ~ 33198150 (-) False XLOC_006748
TCONS_00012994 mRNA downstream 16367 33174218 ~ 33194647 (-) False XLOC_006748
TCONS_00012999 mRNA upstream 2035 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00013000 mRNA upstream 24310 33251721 ~ 33256667 (-) True XLOC_006751
TCONS_00013004 mRNA upstream 87262 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013005 mRNA upstream 87264 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00013006 mRNA upstream 87436 33314847 ~ 33317326 (-) True XLOC_006753
TCONS_00012961 other downstream 615794 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1515967 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1564008 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1631450 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1770074 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 384292 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 432297 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1411218 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1416739 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1955583 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07429147_07434790.mRNA True 2368 mRNA 0.51 12 CI01000012 7429147 ~ 7434846 (+)