RNA id: TU24929


Basic Information

Item Value
RNA id TU24929
length 1642
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G22112
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1877929 ~ 1879570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTATCATCTTCTGATGTCTACTTCCAGCAGGAAAACTCGCCATTTCACAAAGCTCAAATCATTTCAAACTGGTTTCTTGAACATGACAATGAGTTCACTATACTCGAATGGCCTCCACAGTCTCCAGATCTCAATCCAATAGCTCTGGGATGTGCTGGAATGGGAGATTCACATAATGGATCAACATCAAATCTGCAGCAACTGCGTGATGCTATCATGTCAATATGGACCAGAATATCTGAGGAATGTTTCCAGCACCTTGTTGAATATCCGCCACAAATAATTAAGGTAGTTTTGAAGGCAAATGATGGTCCAACCCGGTACTAGCAAGGTGTACCTAATGAAGTGGCCAGTGAGTGTATATTGGCAATTGTTTCATGATAAAAAAAACAAACAAACAAACAAAAAAACTGAAGTGATAAAACAACAACAACAAACTACTTGAGACCCCTAAAACAATAGATGACCACATTTACAAGCGCTTGTGTAAGGGTGTTCAGAGATACAACTCTAGTTTGACATTTTTATCAGTCATAACTTCTGGAGAGAAATAGCGCAGACACTGAAGCTTTTTAGTTCAATACTTGGGGTAAAGGCCCCGATATAAAAGCAAAATAGAAGAATGAACAGGTTTGACGTCATTTCAAACAAAATCTAGCCAAAATGAAGGGGCTTTGGAGTTGGTTTAGTGGTCCGAAACAGTTTGCCAGTCTGAACTTTCCAGAAACTTCGAAAATGACTCCGTTATAAGACACCAATTCCAATACGAGTAGATTTTAACAATACCTAAGTATTTTACTCGTACTGAATGTAGGTTCAAAGATTCACTAGTCTTTAACACCTAAGAGACATGCCAGTCAAAATAAGAAACAACTGATTTGTAAGATGAGAAATCAAGTAGACAGTAAAAGTTGCTAATATCTTTGATACTCAGTACAACTACAAAGTATAGCTAAAAATATACTTAAAATAGTAACCAATTACATTTAGTCAACCACTGCTCCTGACCAAAAAACTTTCTCAGTGAAACAGGCTTCTCGAACAAGAAAAAATGTGGGGCAGGATTTGATTCTGTCAATGAGGAATTGATTGGATGGTTGGATGTTTGTGATTTGCTATTGGTGGATCTCATGATGTGAGTGACAGGTTGTCCCGCCCTCACACCAGTAAACACAGAGAAGTCATCAGAGAAGAGATGTCGCAGCAAGGAGGGGAAATTATTTCGATCAAAGATTACGAGGGTACATTAAAGGCGTCCTATTATGCTTCTCACTTTTTCAACTTTAGTTAGTGTATAATGTTGCTGTTTGAGCATAAAAAAGATCTGCAAAGTTACAAAGCTCAAAGTCCACTCCAAAGGGAGATATTTTATTTAACAGAATCCACTTTCCAAGAACTACAACAAATGACTCATTTGGAATATAGTGCATTTTTTTCCAGGTTTTGTGAAGTCACAATGTTACTCATTTAAATAATCCCCACCCACAGAATGCTTAAAAAAAGGGGACAAGGCCTGGTTGAGCTGCATTAGAGAAATAGTGTTGCCGCTATGTCACAGAGACGCTGTTTTTTTCCACCCCGTTGCTAGGCTGACGGACTTAAAGTGGTTAAAATTTATTTTAAACACTGTTCCTGAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24927 lncRNA upstream 9791 1867644 ~ 1868138 (+) True G22110
TU24884 lncRNA upstream 28065 1847138 ~ 1849864 (+) True G22081
TU24917 lncRNA upstream 184535 1692922 ~ 1693394 (+) True G22101
TU24916 lncRNA upstream 185479 1692246 ~ 1692450 (+) True G22100
TU24855 lncRNA upstream 231671 1586743 ~ 1646258 (+) True G22067
TU24930 lncRNA downstream 859 1880429 ~ 1880761 (+) True G22113
CI01000002_01821988_01829384.mRNA mRNA upstream 48499 1821756 ~ 1829430 (+) True CI01000002_01821988_01829384
CI01000002_01755342_01805760.mRNA mRNA upstream 72157 1754468 ~ 1805772 (+) True CI01000002_01755342_01805760
CI01000002_01650177_01674596.mRNA mRNA upstream 203272 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
CI01000002_01546448_01547246.mRNA mRNA upstream 330455 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01474926_01477596.mRNA mRNA upstream 400016 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
TU24708 other upstream 468872 1387614 ~ 1409057 (+) True G21930
TU23905 other upstream 1352132 523007 ~ 525797 (+) True G21272
TU23885 other upstream 1397474 479147 ~ 480455 (+) True G21254
TU23870 other upstream 1414013 463555 ~ 463916 (+) True G21239

Expression Profile