RNA id: CI01000003_00011191_00013812.mRNA


Basic Information

Item Value
RNA id CI01000003_00011191_00013812.mRNA
length 1082
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000003_00011191_00013812
representative False

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 11191 ~ 13898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATCCATCTGCTGAATACACTTCTGATGCATCAGGTTCACCTGGTCCTGGATGCTCCACTTCATCATCAAGCACTTCAACTGGAAGATGTGAGTAAAAATATGATCTTAAACATTAAACTAAGGGGATGGTTGCGCATTGTTCACAGTGACCGCAAAGCCACAGTGCAACAAATCATCAGCAATTACAAAAGTGGTGACCTGGGCAATGTGTCACAGCACACAGTTCATTGCAGCCCCCTATCATGGGGATGCAGCTTAGTAGTTGGCTACACAGGCACAAGCGCAGAAGGCTGCGATAATCTCTGTGCTTTGACACATTGCTCTGGTGACACTAGCACTAAAACTTTGGTTCCTGACAATGACTGGCAGTATGATTTTGTTGTTCCGTGGGAAAAAATGCCAGCAAGTTTTATGAAGAAGACTAAAAGTGGGGAAAGGCTGAGTTGCTCTGAGAGAAGACAGTTGGTTCGCACTGTTGCTTCTGAAATCCTAGAATGCAAAGAGAGAGCAAGCAGAGCAGGGAGAATCCTCACCAAGATTCGAACTGGAGGGGATCATGTTTGTGGGGCAGTGATGTTCCTGTTTGCCCATTTCAAAAATGACCAAGACCAGTTTCTTGTGATGGTAGAAGACACTTGTGTTCCAAATGATATATGCCCAGAGCAGCTTCCACCTACTCCATGTATAGTGTGTGGAGAGAACCCACTGACAGCCAGTTTATACATGGTAGCAGTAGACCAGATGATTGTGAATGACCATCTTTTCAGATTTACTGAGGCCCTGTGTCTGATGTTTTCCCTCTACTACATATTGAACATCAGTTACCCTGTAGAACTGGAGGCCACACTAGAATTCTTGCAAAGGTGCATCTTCAGGATAAATCCTCATAAAGGTACCAAGGTGGAAAAGAGAGAGAAAAAGCGAGTGTACTCTGTCAACCCAAAAGTATTGAGTCTCACATCAAAAATTGCTGCATTTGACTGGGGAGACTAACAGGTATAGTATTTTGAGCAGGGATCTCTGTGCCATCTTGTATACATAGCAGTGGCTTTATTGTCTGTGTTTATCATTCATCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU25181 lncRNA downstream 13365 27263 ~ 27570 (+) True G22337
TU25183 lncRNA downstream 19256 33154 ~ 36618 (+) True G22339
TU25253 lncRNA downstream 123995 137893 ~ 142513 (+) False G22394
TU25254 lncRNA downstream 123995 137893 ~ 160460 (+) True G22394
TU25256 lncRNA downstream 131960 145858 ~ 146705 (+) True G22396
CI01000003_00007611_00010967.mRNA mRNA upstream 224 7611 ~ 10967 (+) True CI01000003_00007611_00010967
CI01000003_00157111_00159800.mRNA mRNA downstream 142965 156863 ~ 160244 (+) True CI01000003_00157111_00159800
CI01000003_00266342_00275005.mRNA mRNA downstream 252444 266342 ~ 275312 (+) False CI01000003_00266342_00275005
CI01000003_00323130_00336023.mRNA mRNA downstream 308969 322867 ~ 336168 (+) True CI01000003_00323130_00336023
CI01000003_00355244_00360638.mRNA mRNA downstream 341346 355244 ~ 360793 (+) True CI01000003_00355244_00360638
CI01000003_00380494_00385991.mRNA mRNA downstream 366596 380494 ~ 386091 (+) True CI01000003_00380494_00385991
TU25282 other downstream 165633 179531 ~ 189439 (+) True G22420
TU25360 other downstream 377115 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25485 other downstream 910905 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1849370 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1849370 1864690 ~ 1866921 (+) True G23315

Expression Profile

CI01000003_00011191_00013812.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.1.
End of interactive chart.

CI01000003_00011191_00013812.mRNA Expression in each Bioproject

Bar chart with 7 bars.
CI01000003_00011191_00013812.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.