RNA id: TCONS_00013000


Basic Information

Item Value
RNA id TCONS_00013000
length 1923
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_006751
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33251721 ~ 33256667 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGACAATCACAAACCCAAACTAACCGATCCGACATCAGAGAGCAGTCGATTACTGTATTATACTTGTGCCTCTTCAACTTACGTCGATTTTATAGGCAATAACATGGATTTAGACTCGCTAAAATATGCGGAATTGCAGCGCCTCGCCAAAGAAGTGGGACTTAAAGCGAATATGAAGGCTGAAAGGCTGTTGAAGGCTTTAAAAGAACACTTTTCACAACAGCAGCTTTCTGAGAACGGCAATGACGCTGCCGCTTCGGACGCGCACGATTCTGTTCCTCCTGTGGACGCGCACGCTGCAACATATGTGACCGAGCGCAGAGGAAAGGGCCGCACCGCCAAGAGGAAGCTCAGTGAACCAACACCGATCATTTCTCCGACTGAAGAAAAAACACCACAAGATGAGGGTCGAAGGGGCTCCAAGAGAAGAAAGGTGTCTTCAGCCAAGGATACACAGACTCCAGTTCCAGCTGAAGCTTTCGCTAAAGAGAATACTATGGAGAAAGAATCTGGAGATCTAAATCCAGATTCTGAAAGTGGTCCAACAGAAACGGGTGTGAAAGGGAGAAGAACAGTTGGTAAAATTCCCCGCCATAAAGGTCTGATGAAGAGAAAACCTGCAATGCGGCCGACAACTCctaACTTCAAGAAACTCCACGAGGCTCACTTCAAAAAGATGGAGTCCATCGATTCGTACGTCcaaagaaagaacaaacaaatggaAGTGCTCAGGAATTCAGTTAAAGAGCTGAAGACCCTGTCAGAAAAGACACTGAAGAAACCCGAGGCAAAGGCTCAAACTAAAGTGCCTTCTAGCCGAGCATCTCTCTTCAGTCCTGCAGTGCAGAAGACAGCAGTGCCAGAAAGACGCAGACTCACTCAGCAGCCGGTCAGCAAGTCCGCTTTAAAGGACACCGCCACCTTCAGGCCAACTGTCCTCACCACCAATAAAATCAATGTCCGGTTTTCTCAAGCCACTCAAGATAATGAATACAAGCGTTCGCTGGTGAAGACTCCAGCTCGTATGTCTCCTCACATGCCTCTCACCTCCACTCCAGGGAGAAAATCTGATGTTCGTTCCAAAGCTGAACTAAACAGAAGTGCTAGCACCATCACTAAAACACCCGGGGCTACGCCATTTGTTTTTAATGGCAACAACAGCATTTCCACCACGCCTGGCACCACCAAGAAAAACACATTTGACCTGAAGGCCAGTCTCTCTCGTCCACTGACCTACAAACCCCACAAAGGAAAACTGAAGCCTTTTGGAGATGCACAGGAGAACACGGCACTTAACAAATCCCAGACTGTCCCTTCACATCAGAAAAACTACAAACAGCACCAGGTTCAAACCCGAGAGGAACGACGTGTCAAGCACACAGAAGATCGAAAGCAGAAGAAAGAGAAGATGTTGGGTGCCAGACGAGGTTTAGTTATGGCCTAACTTGCAGTGTTTTTACTACTTTTACTTTGACACTCACTGTACATGTTTAGCTTTCGTCtcgtttgtctgttttttttccaaactaTTGTACATTTTTGCTCTTTTCTAAACACTTGTTCTTTGCTGACTCTTGTTGTCATTCTACTAAAGTCTTTTAGCATTTCTAGACGAGGTTTtttgatactttgttttttatgtgAAGAAAAACTATTCTGACCAATATTATTTGGTATGAATGGTTGAAATGTATTTGCTTCAGTGTATTGTAAAAACAAGAAAagatcaaaacaaaacattggCCATACAAAAAGTTTGTTTGAAACTTGAGTGATAAATTATCATTTTGTACTTTTTCATGGGgtcatattttatgtatatttgtcTGTATGAACGATGAtgtctctttaaaaaaacaaacaaacgtccAAGTACTTTTTTCCCgaaaagtttttaattaaagaatttgTTAATCCATA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007049 cell cycle biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030827-5 Predicted to enable microtubule binding activity. Acts upstream of or within neural crest cell migration. Predicted to be located in spindle microtubule. Predicted to be active in mitotic spindle and nucleolus. Is expressed in blood island; brain; head; neural crest; and proliferative region. Orthologous to human NUSAP1 (nucleolar and spindle associated protein 1).

Ensembl:

ensembl_id ENSDART00000003314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 242082 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 255225 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 444080 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 629198 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 631595 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 4464 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 4464 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 4464 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 4464 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 7996 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012999 mRNA downstream 5567 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00012998 mRNA downstream 24310 33211014 ~ 33227411 (-) True XLOC_006749
TCONS_00012995 mRNA downstream 44297 33175260 ~ 33207424 (-) False XLOC_006748
TCONS_00012997 mRNA downstream 44354 33199929 ~ 33207367 (-) True XLOC_006748
TCONS_00012996 mRNA downstream 53571 33196801 ~ 33198150 (-) False XLOC_006748
TCONS_00013004 mRNA upstream 58006 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013005 mRNA upstream 58008 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00013006 mRNA upstream 58180 33314847 ~ 33317326 (-) True XLOC_006753
TCONS_00013007 mRNA upstream 63396 33320063 ~ 33321058 (-) False XLOC_006754
TCONS_00013008 mRNA upstream 63937 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00012961 other downstream 656501 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1556674 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1604715 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1672157 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1810781 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 355036 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 403041 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1381962 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1387483 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1926327 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07401962_07405598.mRNA True 1371 mRNA 0.48 12 CI01000012 7401962 ~ 7405598 (+)