RNA id: TCONS_00013003


Basic Information

Item Value
RNA id TCONS_00013003
length 4495
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_006752
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33261131 ~ 33301170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGCGCAGAGGGGCCAGGCTCAGCGAACACCACAGAGCCTGGCCCGAACAACTTCAACCAGCAAATTTGTTGAAAATTACTCTTCACTCCAGTCCACATGTTTCCAAACCAGCACGAGATCACCGCTGACGATGAGACCATCTTGTCTTTGTTCTTCAAACCGCCCTTCATCCTGATAAGTTGACCTTCCTCCAGCGTTATTTCAGGGAAGTGTTTGTTCAGCATACCAAGCCAAGTGTTACTGGTCTATGAACATATCATCTCTGCACTTTGGAGAAGACAactgaagttttttttaattcacataaACTCCCCCACAAACTCTTCTTGTGTTCAAAAAAGCTAAATGACAACACAATTGTGCCACAACATGGTGCCATCGACTGGTCATATTGTTCAGAATAAATCAAATATGGTTGCAGTTTTTGTTAAATGAAgataaaaatgcagaaaaaaatgcacatttaaaatctaaatcatGCAAGCAAGAAGACAGAGCTACATCCAACAGTTTTATTATCTGCAGATTAAGTGCCTAGACGAGTCTCTTTTTAATAGCTCCTGCCTCAATTTCCATGGCTTCGCTCTAAAGTAAAGCACTTCTTTGGACATTTTAGTCTTTCAAATGGCTGAAAATGTAGTTTCTGAGACGACAAACTGTAGACAGCTAGCTGTTCTCTTAATTCACAACTCATATTGGTGCTTTAGCAAAACCAtgacccatgctttcatgttttctACAGTATATACTTGTACTGACAAACCAAGACAGGCAGTGGCATAACAACCCAAAAAAAACATAAGCTTTATAAATCCCACAGTTAAACCTTTCTAGCGGGGTGCTATTGAGTTGCAGGATGTTATGAAAAATAGTTATTTTACTACCTCAGAAGTTACCACAGCTCAGAGCCACACTTGGATCAAACTATAAGAGCATGCTtgtcttttttgtttgcagtaaaataaatatagtcGTTATAGTCTGTCTAATGGCTTGGTAATCTGATGAGAAGAggaattaatttttcttttgtatGTGTGAAATATCGTATTGAGACTGTATGTTCTCCAGAATAAGATAAACATCATGTTCATCCATTAACGTTATGCCTGAAGAAAGGCAGTAAAATGGTTAAATGATCATAACATCTTTAAATAGTTGCTAATAGTCTAATATGTTGGACAGTAAGACTGGTTTCTAGTTATCTGCTATAGAGCACTGTGAAAATAGGAATTTCTCTTCATCTGTTGTGACACTacatcttttttgttgttgttggtataGTAGTTCCTATCATACGGATGGTAGATATTCAAGTGTTCTGAGTTTTCATGAGAGGAAGAGTAGCGAGGCCTCAGTGTGGGAAATGTGcaatatttgtttctttgtcttgttttgagatgAATATGTATATTGTACAAACAAGTGACAAGTTGTTcgcaaaaacaacaaaatcacCAATGTCTTCCATTAAATGATGTATAGTTTCATCTGCTTGCTTTAGGGTGGCGGGATTTGTAGTGCCAGCGTAGACATGGACATGCATGTACGGTAGCGATGCTTGCTGAGTTTAATAGTCGTAGTGACATTCAGTATAGGCTATAATAAAGTCAGTTAGTACATAAATATAGGCAAAGATTTAGTTAGTAAACACCATAGATGCAGTATCCACACCTTGGTTAATTTGATTAAGAAGCGagtagtagggctgcacgattctggctaaaatgaaaatcacgtttttttgttgttgttttttttttaatcaagatcgcgattttctcacaattctataGATGTAGAATAAAGGTTTATATGAgaaggctattattattattgttaattttcaaatatatggtaaaacaacattagcattagGCCTGTGTCATTCTAACGTTTTGTATAGGCTTGGAATGGTGGACTGGTTCATGTCTTTAACAACATTATTAGAAaatttttttcactggtaaaattaaaccagtagtatcgtcattaatggtctatctacaatagataatgttacATGTGGAAAATTAACTAAAATGCTCACATTCACATGTTTGTGCAATAATAGACcttttgatttgaatagttttgtGGAGCCCTTTGTGTTGAATTCATGCCTTTTATGGTAACCTGTTGCATGTTTTCTGACGCTTTAGTTCGAGTGCAtatctgaatcagttcattttTGTTCCTGTCAATATAATTTAGTAGCTATAACAACCACAACGAtctctttaaaagaaaataacaatagtttaaaaaatgagcaacaggaaacattaaaacaattttatatacATCAAATAGCCAAATTTTgctggaaaaatgctcttttggtAACATATTTCAttcggtataatttgtatctttattttaaagtatttttgttggtcagttttcTACAAAATAAACGAAAAGAACGAATGCATTTTAGCTGAAGTGATGTGCAAATACTTCttcaataataagggaattatgaattaaattcaagtaaacctattataacataaaatatagtatttctaataattttatttatttaatagatttGAGTTTGAATTACAGTATCACAATACTATTTGATTCCACAATACTTCAACTGGTATAGTATCTTAACGTAAATTAATAGTATCGCGACAACCCTAATAAATATAGTATGGGACACGTAACagcatttggaggtgtccacattGCTGAGCAACTTGcctaaaacaatgtgaagacttgtgcgactgccCTTACGCTTCTCTCCTGACTTAATATACGTAGGTGAATCGTACAACAGCTGGATTAAGATCatgtgtagggtcgaatcaagATCACGTTCTTTtatcgattaatcgtgcagccctagcaaGTAAGCATTTACTCTTGGTTTTAGTTTTTAAGTGACATACGCTGTAGTTTATTCACTGGTAATCACTATTAGTTGATGATAACGTCATAGCATGCTGAGGATTAGTAAAATGGCGGTTGGTATTGATGTGCGACTAGCCATGCTGAAATGCATATATATGTTTCATAAGCACTGTGTCAGTTTGTCCTAGTTTGTACTGTGCAAAATGAAGTTCTGGGCTCAAAATAGTCGACTCAGATCAAAACGTCTGTCCCAAATAGGCCAAAATTTGGCTCAGTAGCTTAGAATACGCAGGTGTTGAAGAACTTCATTCAGTACCTGTTTCAAGGTTGCTAAAACTGTACTGGACAGAAAGAATAGACTTCTCTCTTCCTAAATAGAACTGTGTTTGTTTTCATACCTCTAATATTGCATTCTCCATCAGGTAATGTTGTCTCAAACTAGAGCTGTGGGTAGATTATTCCTAGTAGCAGAACATGTAGATTTTAACTCAACGTGTAGAAAATTAAGTGGCATAAAGCAATTATCAAAGCATTGTAATGTAGATAAATACCTCAATGACTGGAATGcaaactatatatttttgaatatacTCGAAAAAATATGCAAGCCATGATGTGTATTAAGTTCATCTTTTAGAAGCAATAATCAGTTTATGCATGAGTTAAAGTACCGGAACAGTTTAGTGGTGTTTGTAATATCTGTAGCATATCTGTGACAGTGACAAGTGTTTGATCCTGAATATCTCATTGCTCATAATTAAAAGTTTTCCATTCCTCCATTTTTCATGgacaccaaataaatatgttaaGGTAGCACTGGGGGTCTGACTAATAAAGAGGATTTTTTGGGTGGGTTGACGAAAGTTAGAAGAATCATCTACATATGCAGGGCTTTTGCTCTTATTAAATTTGCATGTTTACCTAATCATTGTGGAAAGCACATAAGCTGTATGTTTATTGACAGCTTATTATCATTAACAGCAATATGAGCAGTGTTCTGGGTAGCAATTTGTAATACTGATGACTCATTATCCTCATGAAGCCTGGACAAACATTTTACCACTTTACATTTACAAACCCCATTTGgagtaaagtattttttaaagagTGCAAAAAAAACCTGATGCATGGTAGAAATGGATAAGAAATGTTTTGTGCTGCATGCAATAATTGAGCTTTGCTTGAAAATGTTTATGCAGAAATGTGATGACACTAAATCTATGAGTGGACCAGTGTTGTGACTTTCTTTTTAAATGCATGGAATCCCAAAGTTGATCTCTACTGTAAATTATTCACAGACGTGTTCATTGAGAAATGTTTGATTACTGTATGATGGAATTGTAACAAGTTTGTTCTTCAAGAGGCAAAGTCAGATGCAGTGTTTTAGCAAAGTCTTAACAATTGTGAGTTGAAACGGGAAAAACTATTTGTGTTATGTTCAATGCAAATAATATTGCAGAATATAAGTTAATATGCTTTGCAGACCTGATTTGCGTTGCTGATTTTGCCTCTGAATGTGAAACTCTATGCTTAGTCTGATCTATGCACTACAGAAGCGTCCCGCATGGTTttgtacaaaatattaaattttagcaataaaaaaaagCAGCATGGTGCCAATCATAA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:1990399 epithelium regeneration biological_process
GO:0060429 epithelium development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 251492 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 264635 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 453490 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 638608 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 641005 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013865 lncRNA upstream 184903 33452438 ~ 33463644 (-) True XLOC_006757
TCONS_00013866 lncRNA upstream 189988 33457523 ~ 33459318 (-) True XLOC_006758
TCONS_00013013 lncRNA upstream 349476 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013014 lncRNA upstream 353735 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013018 lncRNA upstream 392173 33659708 ~ 33662432 (-) True XLOC_006761
TCONS_00013000 mRNA downstream 4464 33251721 ~ 33256667 (-) True XLOC_006751
TCONS_00012999 mRNA downstream 14977 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00012998 mRNA downstream 33720 33211014 ~ 33227411 (-) True XLOC_006749
TCONS_00012993 mRNA downstream 53707 33170350 ~ 33207424 (-) False XLOC_006748
TCONS_00012995 mRNA downstream 53707 33175260 ~ 33207424 (-) False XLOC_006748
TCONS_00013004 mRNA upstream 47138 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013005 mRNA upstream 47140 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00013006 mRNA upstream 47312 33314847 ~ 33317326 (-) True XLOC_006753
TCONS_00013007 mRNA upstream 52528 33320063 ~ 33321058 (-) False XLOC_006754
TCONS_00013008 mRNA upstream 53069 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00012961 other downstream 665911 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1566084 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1614125 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1681567 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1820191 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 344168 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 392173 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1371094 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1376615 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1915459 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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