RNA id: CI01000003_00413809_00414819.mRNA



Basic Information


Item Value
RNA id CI01000003_00413809_00414819.mRNA
length 2120
RNA type mRNA
GC content 0.36
exon number 2
gene id CI01000003_00413809_00414819
representative True

Chromosome Information


Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 412590 ~ 415156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATATAAACTCACGTCTTTATTTAGCTTACTGCACATGACTGTAGTCATGTAGTCGGCAACTGGTAGGAAAATGCCTTTCTATTGTTGTCTTGTATGTCTCATATTTAAAACATAATTGTTGTAATTTCTAGCAATACCTATGCAGCTTGGGTTTTTGTTGTTTTTGTGTGTACCCTGTCGACTCCATTTACAGTACTCATTCTAACTTGTGGACAGGCCAATTTATTAAAAATACATTAAAAATGCAGTTCATGCATATGACTTTAATACTCATCTTCTATGATGAGCATCTTCGACTGTACACAAAGGTATTTCATGACATTTTTGCCTGTTGTTTTGTGCCTGATGAAGATCTGTTGGATTGAAACAGTGTTTTTTATTATTTTATTTTTTTTCCCCCTTGAAATTTCCTTTAAAAAATGATATATGTTTTACAAAACCATATAAATCTAACATGAACACATTTCTGAGAACTTGGCACATGTGTTTTAAACTTGATTTTAAAATATTTTTACTTCCTTTATCTTATATTTTCATTGACCTTTATACATTCGTGATTTTTTGAGAACAATTGCAGCTGCTTGTATTATTAACTATTTATAACAGGGGTTTTCTCAACTCTGGCCCTCAAGGTTCACTTTCCTGCAGAGTTCAGCTCCAACCTTGATCAAACTCACCTGTCTGTAACTTTGTAATAATCCTGAAGACCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAAGGTGTGTTCACGGCATGACTTAATTACCATAATTACAGTACGAGATTCCAATTTGTAAAAAGCATCCACGTCTTTGTAGCTCATAATTACACCTTGTAAGCTGGGAATTTTCTTAGAGCTCCTACTTGTACTACGCAACTGCTGTACCACCGGACTGCCACAGATTGATTTAGGTATTGATAGAGTAGAACGTGACGTGTTTTCATCTTGAAATTACGGTAATTACAACATGGCGTGAACGCAGCATAAGCTCTGCAGGTGAGTGGACCTCGAGAACCAGAGTTCAGAAATTTATAAATACTATATTGACTCAAAATAATAATAATAATAATAATAAACCGTAATAAGTATAGCTTAAAGCTCAAACTGGTTATAAATTGTCTGGTTGTTGGTTGTTGTGTTTTATTATTATTATTATTATTATTATATTAAAAAACTAATATTATTTCTTTTCGTGCAGCCTTATGTCAATATCACAGATAACACCCACCCTCTTCCTGAGCGGGGCTGATGCTCCTATGAATCAGGCACTTATGACCCGCAAAGGCATTACACTCATTGTGAATGTGACCCTGTCCCATGCCTGCCCTATCTACCCAGGTGTGAAGTGCATACGTGTTGCAGTGTCTGACCTCCCAAATGCCCGTCTGGGTGATCATTTTGACCATGTTTCAGCTCGAATCCACAACAACAGAGCCGGAGGAACCCTAGTGCACTGCGCTGCGGGCATGAGTCGCTCACCTGCTCTAATAATGGCCTACCTCATGAAGTACAAAGGAGTGACTCTGCGGCAGGCACATAACTGGGTTAAAGACAGTAGACCCTACATCAGCCTTAATACAGGATTCTGGACCCAACTTCTGGACTATGAGAGGAAACTCTACGAGGACACTGTTGGAGCATCAATCTCATACTATGCAAGAGAAGGCATAGGGTTAATGAATGGAAGGCTCAATAGAAAATTGAGATCAGTTTTGAACATATTTATCTCAATCAATCTAAAGCTAAGTTTGCCTGAATTTCTATGATGTGCATGAGATAAAGCCTGCAGACTTTCTTTTTTTTTTACTTTCAAACAAGACTATTACAATATTACATTTTATTACAAAATATTACAATTACATTTTCAGTTTATTTTAATTGTACTTTAACTTAAAACTCAAATTGCAGTTCTGCATCCTGCTTGCTTTCAATTTTGCAATTCAACTCTCGGTTGCAAAAACCCTGCTCACAAAGAGATATTTATTATTTTTTTTATTGTTATTATTATTTTAAATTTCTATATTATAGAATTGGCCCTGTGACACAAGGTGAGCATCTCAATGAGACAAAAAAAGTCTCAGGTTATCATTCCTCACCTTTATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU25370 lncRNA upstream 978 410563 ~ 411612 (+) False G22488
TU25369 lncRNA upstream 978 410760 ~ 411612 (+) True G22488
TU25397 lncRNA upstream 21678 390622 ~ 390912 (+) False CI01000003_00390997_00406970
TU25391 lncRNA upstream 39771 372551 ~ 372819 (+) True G22506
TU25386 lncRNA upstream 55776 356555 ~ 356814 (+) True G22501
TU25373 lncRNA downstream 35392 450548 ~ 451101 (+) True G22490
TU25409 lncRNA downstream 53517 468673 ~ 468902 (+) True G22524
TU25429 lncRNA downstream 106993 522149 ~ 522653 (+) True G22544
TU25438 lncRNA downstream 145764 560920 ~ 561612 (+) True G22551
TU25492 lncRNA downstream 166912 582068 ~ 582405 (+) True G22585
CI01000003_00390997_00406970.mRNA mRNA upstream 4278 390897 ~ 408312 (+) False CI01000003_00390997_00406970
CI01000003_00380494_00385991.mRNA mRNA upstream 26499 380494 ~ 386091 (+) True CI01000003_00380494_00385991
CI01000003_00355244_00360638.mRNA mRNA upstream 51797 355244 ~ 360793 (+) True CI01000003_00355244_00360638
CI01000003_00323130_00336023.mRNA mRNA upstream 76422 322867 ~ 336168 (+) True CI01000003_00323130_00336023
CI01000003_00266342_00275005.mRNA mRNA upstream 137278 266342 ~ 275312 (+) False CI01000003_00266342_00275005
CI01000003_00431473_00447759.mRNA mRNA downstream 16317 431473 ~ 447950 (+) True CI01000003_00431473_00447759
CI01000003_00538178_00547944.mRNA mRNA downstream 122929 538085 ~ 547983 (+) True CI01000003_00538178_00547944
CI01000003_00568546_00573291.mRNA mRNA downstream 153390 568546 ~ 573869 (+) True CI01000003_00568546_00573291
CI01000003_00596144_00607951.mRNA mRNA downstream 180988 596144 ~ 608038 (+) True CI01000003_00596144_00607951
CI01000003_00644619_00663181.mRNA mRNA downstream 228499 643655 ~ 663280 (+) True CI01000003_00644619_00663181
TU25360 other upstream 17376 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 223151 179531 ~ 189439 (+) True G22420
TU25485 other downstream 509647 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1448112 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1448112 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 1449452 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 1865504 2280660 ~ 2285641 (+) True G23870

Expression Profile


CI01000003_00413809_00414819.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
End of interactive chart.

CI01000003_00413809_00414819.mRNA Expression in each Bioproject

Bar chart with 37 bars.
CI01000003_00413809_00414819.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.