RNA id: CI01000003_00431473_00447759.mRNA


Basic Information

Item Value
RNA id CI01000003_00431473_00447759.mRNA
length 2464
RNA type mRNA
GC content 0.47
exon number 17
gene id CI01000003_00431473_00447759
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 431473 ~ 447950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACGTGGAAGAGTGAGGATCTGGAGCATGTAGCTGAGGAAGAACAGTGTCTGCAGATCCAGGCCTGCTCCAGGAAACTAACTGTCATCAAAGATGTGCTATCCCGCAGACACATGAAGGTGGCCTTCTTTGGCAGGACCAGTAATGGAAAGAGTACAGTAATTAATGCCATGCTAAGGGAACGGGTCCTGCCCAGTGGAATCGGCCACACCACAAACTGTTTCCTGAGTGTGGAGGGCACAGATGGGGAGCATGCCTACCTTACCACTGAAGACTCTGAAGAGAGGAAAAGCATTGAAACAGTCAATCATCTGGCCCACGCTCTGCATATGGACAGGAACCAAGACTCTGGCTCTCTAGTCCGAGTGTTTTGGCCCAAAACTAAGTGTGCACTGCTGAGAGATGATCTGGTTCTGATGGATAGCCCAGGCACAGATGTCACATCAGAGCTGGACAGTTGGATTGACAAGTTCTGTTTAGATGCTGATGTCTTTGTGCTTGTTGCCAACTCTGAGTCTACCATAATGAACACTGAGAAGCACTTTTTCCACAAAGTGAATGAGCGTATATCAAAGCCCAACATTTTCATCCTAAACAATCGCTGGGATGCAGCTGTCTTGGAGCCAGAGTATCTGGAAGATGTGCGGAAACAGCACATGGATCGCTGTGTCAGTTTCTTAGTGGAGGAGCTGAAGGTAGTGGACCTTAACAAGGCACCTGACCGCATCTTCTTTGTCTCTGCCAAGGAGGTGTTGAGTGCCAGGATCCACCGCGCCCAAGGAATGCCAGAGACTGGCGGTGCTTTGGCTGAAGGATTCCAAGAGCGACTGATGGAGTTCCAGAATTTTGAAAGAACATTTGAGGAATTTATATCCCAGTCTGCCGTGAAGACCAAGTTTGAGCAGCACACAATCAGAGCCTGGCAGATCATTGAGTCGGTCAAGGCTATCATGGATGCCATCAATATTTCTTCAGCAGAAAAGAAAGTGTTCTCACTTGAAGAGCGTGAGGCTCTAATGGACCGGCTAGAGTTTGTGCGAAATCAGCTTAACTTCCTAACTGAGGACATCAAAGACAAGATAAAGGCCATCACTGATGAAGTGGCTGCCAAGGTGTCCAGTGCCATGGCAGAAGAGATTTGTTGTCTGTCTGGTCTTGTGGATGAATTCTGCACTGATTTTAGCCCTGCCCCAAACGCCTTAGCCCTGTACAGAACTAAACTTATGGCCTATGTGGAGGAGATAATGGTGAAGAATTTGGACCTCCGCTGTTCCAGCACTATAAACGGCTGTGTGCTGTCATCTCAGAGAGACATAATGGACACTCTACGTCCTCTGCTGCCCCCTGCTGCCCGAGGTCAACTACACATCCCCAACAGGAAGTTCACTATGACCTATGACCTGAACTTTGCTAGCCTCTGTGAAAATTTTGTGGAAGACATCGACTTTCACTTCTCACTGGGTCTTACATCCTTGGTGAATCGTTTCCTGGGGCCTGCTAAAGCCAAACAAGCTTTGAGTCTGTTGGACCAGAATTTGAAAGTCACCTCTTCCTCTGCTCCCATGAGAACCCAGACCCAGGAGGAGCTGGCTGTCTCCATGGCAACAGGACTAATCTCTCTCACTTCCAGAGCATCGGTGGGCATGTTGGTCACTGCTGGAGTGGTGTGGCGTTCTGTGGGCTGGAGGGTTATTGTACTCTCTGTGAGTCTCTACAGTTTGCTCTACCTGTATGAAAGGCTCACCTGGACCAACAGCTCTAAAGAAAGGGCCCTTAAGCAGCAGTTCGTGGATTACGCCACTCAAAGACTGCAGGCCATCTCACACATCATCAGCAGTGACTGTGGACAGCAGGTGCAACAGGAGATGGTGGCCGTCTTTGCCCGCATGTGCCAACAGGTTGACAAGAGCGAGATGGAGCTTGAAACTGAGATCCGCAGACTCAGCGCCAGGATCCAGCGCCTGGAGAGTGTCCAGAGACACTCCAAAACCCTCAGCTGGACAAATACTAAGACCAAAGTAAGCCATCTGGAGATTGATTCCTCTGAGGCCTTACCTCGTGAAACAAAAACAGGTTTCTTGTCATTTAAACCTTATAATATTGGTCTTGTTTTATTCTCAGGCACAAAGCCACTGATCTGGAGTCACAACTGGAGTCTTTTTCAGCACATTATCTGCAGATTCAGCATTAACCAGAGCAGCAAGAAACTGTGGATGAGCAGGAGTAAGACTGTCCTCCAGTGTTCACTGCTGGAACAACCCAAAATCTGCTGAATGAAAAGTTACATAGAATCTAAATTTATTTAATTTCAGTATTTCATACAAGCCTCTGGAACCCAGATTTCTCAATGACAAAAATCTAATTGTAGCAAGTTAATAATATGCAGACAACTTCCTTGATGAAAAGCCTTTATTGGTTATGAGAACAAATAGTAACAGGTGACACTGCCACTGCACAAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU25370 lncRNA upstream 19861 410563 ~ 411612 (+) False G22488
TU25369 lncRNA upstream 19861 410760 ~ 411612 (+) True G22488
TU25397 lncRNA upstream 40561 390622 ~ 390912 (+) False CI01000003_00390997_00406970
TU25391 lncRNA upstream 58654 372551 ~ 372819 (+) True G22506
TU25386 lncRNA upstream 74659 356555 ~ 356814 (+) True G22501
TU25373 lncRNA downstream 2598 450548 ~ 451101 (+) True G22490
TU25409 lncRNA downstream 20723 468673 ~ 468902 (+) True G22524
TU25429 lncRNA downstream 74199 522149 ~ 522653 (+) True G22544
TU25438 lncRNA downstream 112970 560920 ~ 561612 (+) True G22551
TU25492 lncRNA downstream 134118 582068 ~ 582405 (+) True G22585
CI01000003_00413809_00414819.mRNA mRNA upstream 16317 412590 ~ 415156 (+) True CI01000003_00413809_00414819
CI01000003_00390997_00406970.mRNA mRNA upstream 23161 390897 ~ 408312 (+) False CI01000003_00390997_00406970
CI01000003_00380494_00385991.mRNA mRNA upstream 45382 380494 ~ 386091 (+) True CI01000003_00380494_00385991
CI01000003_00355244_00360638.mRNA mRNA upstream 70680 355244 ~ 360793 (+) True CI01000003_00355244_00360638
CI01000003_00323130_00336023.mRNA mRNA upstream 95305 322867 ~ 336168 (+) True CI01000003_00323130_00336023
CI01000003_00538178_00547944.mRNA mRNA downstream 90135 538085 ~ 547983 (+) True CI01000003_00538178_00547944
CI01000003_00568546_00573291.mRNA mRNA downstream 120596 568546 ~ 573869 (+) True CI01000003_00568546_00573291
CI01000003_00596144_00607951.mRNA mRNA downstream 148194 596144 ~ 608038 (+) True CI01000003_00596144_00607951
CI01000003_00644619_00663181.mRNA mRNA downstream 195705 643655 ~ 663280 (+) True CI01000003_00644619_00663181
CI01000003_00665762_00716862.mRNA mRNA downstream 217011 664961 ~ 717379 (+) True CI01000003_00665762_00716862
TU25360 other upstream 36259 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 242034 179531 ~ 189439 (+) True G22420
TU25485 other downstream 476853 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1415318 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1415318 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 1416658 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 1832710 2280660 ~ 2285641 (+) True G23870

Expression Profile

CI01000003_00431473_00447759.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
End of interactive chart.

CI01000003_00431473_00447759.mRNA Expression in each Bioproject

Bar chart with 37 bars.
CI01000003_00431473_00447759.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031804 True 1317 mRNA 0.49 10 NC_007113.7 5338759 ~ 5356686 (-)