RNA id: CI01000003_00596144_00607951.mRNA


Basic Information

Item Value
RNA id CI01000003_00596144_00607951.mRNA
length 1020
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000003_00596144_00607951
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 596144 ~ 608038 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACAGCAAAAACAGCTGCTATAATCACTGTTCAGTATGAGAGAGCCAGACGGGATGGACATGTGTTGGAAAGCGCCTATGTCATATTGTTTACAGATCCACATTCTGTTACAGAGAATATGCCCAGTCTCAAATGCCGCGGAGCAGATTGGCGGTGGAGACTGAATCGTAGCGTCTGTGTGTCTTTTGAATGGAAGCGCAGGGCTGTCAGTGGAGTAAAGCTCAATTCTGTGTTGTCGCTCGACTGTCAGGTTAAAGAAGTGCAGCTCGCGCTCGACTCTAAAATCATTTCATATCAGCCTGAACCGTCCTCATGTTTACCGGATAAACATTTGAGTTTCATGCCAACTGCGTCTAACTTACCCCTCCTTGACACTCTGGACGAACTCGTGTTGGGAGAGGAGCGTTTTATTATCGCGTGTATTGTTAATTTTTGTCGCGAGCTCTGCTGGATTGGTTATCGTGCACGAGCCCAACCTAAACATGCCAATGCACAGAGGGCTCTGTTACTGCTGGAGGAATACCGGTCAAAACTCAGTAACACTGAAGACAGACAGCTGAGAAACTCCATCCAGAGAGTCATTGACATCTTCCAGAGTAACCTCTTCCAGGCGCTTATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGATAATCAGAGATGTGGGGAATCAGTGAAAGTGCCCGATGCAATGCCCCCAGTGAACCTGTGGGATTTCTCCAGCATTCAAAGCACAACGGTGACTTCCGACACCCTGCCCAGCCTTAGCACCAGCATAGAGGTCAATTTGATGCTGTTTAAAACTTTTTATATCATTCAATTACTGCTAAGCATCTCACAAATATCTCACAGTTTAAAAAGATTGATGTTGTCAGAAAATGGCATACTGTTTATTTTTATTAAACAAGACCATAATATGGTCCTTTAATTAGACCGCATTCAGATTACAAAGCACCAACCAAACATGACATGGTTGATTGACATGTCTATTGGAAATGGATGGCAGTCTTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU25492 lncRNA upstream 13739 582068 ~ 582405 (+) True G22585
TU25438 lncRNA upstream 34532 560920 ~ 561612 (+) True G22551
TU25429 lncRNA upstream 73491 522149 ~ 522653 (+) True G22544
TU25409 lncRNA upstream 127242 468673 ~ 468902 (+) True G22524
TU25373 lncRNA upstream 145043 450548 ~ 451101 (+) True G22490
TU25490 lncRNA downstream 136643 744681 ~ 744938 (+) True G22583
TU25481 lncRNA downstream 209760 817798 ~ 819540 (+) True G22574
TU25508 lncRNA downstream 271593 879631 ~ 879868 (+) True G22601
TU25509 lncRNA downstream 271915 879953 ~ 880262 (+) True G22602
TU25510 lncRNA downstream 272583 880621 ~ 880871 (+) True G22603
CI01000003_00568546_00573291.mRNA mRNA upstream 22275 568546 ~ 573869 (+) True CI01000003_00568546_00573291
CI01000003_00538178_00547944.mRNA mRNA upstream 48161 538085 ~ 547983 (+) True CI01000003_00538178_00547944
CI01000003_00431473_00447759.mRNA mRNA upstream 148194 431473 ~ 447950 (+) True CI01000003_00431473_00447759
CI01000003_00413809_00414819.mRNA mRNA upstream 180988 412590 ~ 415156 (+) True CI01000003_00413809_00414819
CI01000003_00390997_00406970.mRNA mRNA upstream 187832 390897 ~ 408312 (+) False CI01000003_00390997_00406970
CI01000003_00644619_00663181.mRNA mRNA downstream 35617 643655 ~ 663280 (+) True CI01000003_00644619_00663181
CI01000003_00665762_00716862.mRNA mRNA downstream 56923 664961 ~ 717379 (+) True CI01000003_00665762_00716862
CI01000003_00731635_00742538.mRNA mRNA downstream 123162 731200 ~ 742609 (+) True CI01000003_00731635_00742538
CI01000003_00747650_00802075.mRNA mRNA downstream 138509 746547 ~ 802681 (+) True CI01000003_00747650_00802075
CI01000003_00842413_00868623.mRNA mRNA downstream 234375 842413 ~ 868663 (+) True CI01000003_00842413_00868623
TU25360 other upstream 200930 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 406705 179531 ~ 189439 (+) True G22420
TU25485 other downstream 316765 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1255230 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1255230 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 1256570 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 1672622 2280660 ~ 2285641 (+) True G23870

Expression Profile

CI01000003_00596144_00607951.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

CI01000003_00596144_00607951.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00596144_00607951.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU813956 True 721 TUCP 0.48 4 NC_048572.1 48542291 ~ 48616523 (-)
eurasian perch (Perca fluviatilis) TU150424 False 1002 TUCP 0.58 7 NC_053122.1 2985332 ~ 3141870 (-)