RNA id: TCONS_00013001


Basic Information

Item Value
RNA id TCONS_00013001
length 4606
lncRNA type lincRNA
GC content 0.35
exon number 3
gene id XLOC_006752
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33261131 ~ 33301170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTAGCAGCACACGGGACCGAAATGGCGTAACGCGCAGTCGAGCACCGCAGCAGCGCAGAGGGGCCAGGCTCAGCGAACACCACAGAGCCTGGCCCGAACAACTTCAACCAGCAAATTTGTTGAAAATTACTCTTCACTCCAGTCCACATGTTTCCAAACCAGCACGAGATCACCGCTGACGTGCCCCTCATTTGTCATATCAAGAAGAGAAAAGAACAGTCCTGAAGGGAACACACGACCAGATGAGACCATCTTGTCTTTGTTCTTCAAACCGCCCTTCATCCTGATAAGTTGACCTTCCTCCAGCGTTATTTCAGGGAAGTGTTTGTTCAGCATACCAAGCCAAGTGTTACTGGTCTATGAACATATCATCTCTGCACTTTGGAGAAGACAactgaagttttttttaattcacataaACTCCCCCACAAACTCTTCTTGTGTTCAAAAAAGCTAAATGACAACACAATTGTGCCACAACATGGTGCCATCGACTGGTCATATTGTTCAGAATAAATCAAATATGGTTGCAGTTTTTGTTAAATGAAgataaaaatgcagaaaaaaatgcacatttaaaatctaaatcatGCAAGCAAGAAGACAGAGCTACATCCAACAGTTTTATTATCTGCAGATTAAGTGCCTAGACGAGTCTCTTTTTAATAGCTCCTGCCTCAATTTCCATGGCTTCGCTCTAAAGTAAAGCACTTCTTTGGACATTTTAGTCTTTCAAATGGCTGAAAATGTAGTTTCTGAGACGACAAACTGTAGACAGCTAGCTGTTCTCTTAATTCACAACTCATATTGGTGCTTTAGCAAAACCAtgacccatgctttcatgttttctACAGTATATACTTGTACTGACAAACCAAGACAGGCAGTGGCATAACAACCCAAAAAAAACATAAGCTTTATAAATCCCACAGTTAAACCTTTCTAGCGGGGTGCTATTGAGTTGCAGGATGTTATGAAAAATAGTTATTTTACTACCTCAGAAGTTACCACAGCTCAGAGCCACACTTGGATCAAACTATAAGAGCATGCTtgtcttttttgtttgcagtaaaataaatatagtcGTTATAGTCTGTCTAATGGCTTGGTAATCTGATGAGAAGAggaattaatttttcttttgtatGTGTGAAATATCGTATTGAGACTGTATGTTCTCCAGAATAAGATAAACATCATGTTCATCCATTAACGTTATGCCTGAAGAAAGGCAGTAAAATGGTTAAATGATCATAACATCTTTAAATAGTTGCTAATAGTCTAATATGTTGGACAGTAAGACTGGTTTCTAGTTATCTGCTATAGAGCACTGTGAAAATAGGAATTTCTCTTCATCTGTTGTGACACTacatcttttttgttgttgttggtataGTAGTTCCTATCATACGGATGGTAGATATTCAAGTGTTCTGAGTTTTCATGAGAGGAAGAGTAGCGAGGCCTCAGTGTGGGAAATGTGcaatatttgtttctttgtcttgttttgagatgAATATGTATATTGTACAAACAAGTGACAAGTTGTTcgcaaaaacaacaaaatcacCAATGTCTTCCATTAAATGATGTATAGTTTCATCTGCTTGCTTTAGGGTGGCGGGATTTGTAGTGCCAGCGTAGACATGGACATGCATGTACGGTAGCGATGCTTGCTGAGTTTAATAGTCGTAGTGACATTCAGTATAGGCTATAATAAAGTCAGTTAGTACATAAATATAGGCAAAGATTTAGTTAGTAAACACCATAGATGCAGTATCCACACCTTGGTTAATTTGATTAAGAAGCGagtagtagggctgcacgattctggctaaaatgaaaatcacgtttttttgttgttgttttttttttaatcaagatcgcgattttctcacaattctataGATGTAGAATAAAGGTTTATATGAgaaggctattattattattgttaattttcaaatatatggtaaaacaacattagcattagGCCTGTGTCATTCTAACGTTTTGTATAGGCTTGGAATGGTGGACTGGTTCATGTCTTTAACAACATTATTAGAAaatttttttcactggtaaaattaaaccagtagtatcgtcattaatggtctatctacaatagataatgttacATGTGGAAAATTAACTAAAATGCTCACATTCACATGTTTGTGCAATAATAGACcttttgatttgaatagttttgtGGAGCCCTTTGTGTTGAATTCATGCCTTTTATGGTAACCTGTTGCATGTTTTCTGACGCTTTAGTTCGAGTGCAtatctgaatcagttcattttTGTTCCTGTCAATATAATTTAGTAGCTATAACAACCACAACGAtctctttaaaagaaaataacaatagtttaaaaaatgagcaacaggaaacattaaaacaattttatatacATCAAATAGCCAAATTTTgctggaaaaatgctcttttggtAACATATTTCAttcggtataatttgtatctttattttaaagtatttttgttggtcagttttcTACAAAATAAACGAAAAGAACGAATGCATTTTAGCTGAAGTGATGTGCAAATACTTCttcaataataagggaattatgaattaaattcaagtaaacctattataacataaaatatagtatttctaataattttatttatttaatagatttGAGTTTGAATTACAGTATCACAATACTATTTGATTCCACAATACTTCAACTGGTATAGTATCTTAACGTAAATTAATAGTATCGCGACAACCCTAATAAATATAGTATGGGACACGTAACagcatttggaggtgtccacattGCTGAGCAACTTGcctaaaacaatgtgaagacttgtgcgactgccCTTACGCTTCTCTCCTGACTTAATATACGTAGGTGAATCGTACAACAGCTGGATTAAGATCatgtgtagggtcgaatcaagATCACGTTCTTTtatcgattaatcgtgcagccctagcaaGTAAGCATTTACTCTTGGTTTTAGTTTTTAAGTGACATACGCTGTAGTTTATTCACTGGTAATCACTATTAGTTGATGATAACGTCATAGCATGCTGAGGATTAGTAAAATGGCGGTTGGTATTGATGTGCGACTAGCCATGCTGAAATGCATATATATGTTTCATAAGCACTGTGTCAGTTTGTCCTAGTTTGTACTGTGCAAAATGAAGTTCTGGGCTCAAAATAGTCGACTCAGATCAAAACGTCTGTCCCAAATAGGCCAAAATTTGGCTCAGTAGCTTAGAATACGCAGGTGTTGAAGAACTTCATTCAGTACCTGTTTCAAGGTTGCTAAAACTGTACTGGACAGAAAGAATAGACTTCTCTCTTCCTAAATAGAACTGTGTTTGTTTTCATACCTCTAATATTGCATTCTCCATCAGGTAATGTTGTCTCAAACTAGAGCTGTGGGTAGATTATTCCTAGTAGCAGAACATGTAGATTTTAACTCAACGTGTAGAAAATTAAGTGGCATAAAGCAATTATCAAAGCATTGTAATGTAGATAAATACCTCAATGACTGGAATGcaaactatatatttttgaatatacTCGAAAAAATATGCAAGCCATGATGTGTATTAAGTTCATCTTTTAGAAGCAATAATCAGTTTATGCATGAGTTAAAGTACCGGAACAGTTTAGTGGTGTTTGTAATATCTGTAGCATATCTGTGACAGTGACAAGTGTTTGATCCTGAATATCTCATTGCTCATAATTAAAAGTTTTCCATTCCTCCATTTTTCATGgacaccaaataaatatgttaaGGTAGCACTGGGGGTCTGACTAATAAAGAGGATTTTTTGGGTGGGTTGACGAAAGTTAGAAGAATCATCTACATATGCAGGGCTTTTGCTCTTATTAAATTTGCATGTTTACCTAATCATTGTGGAAAGCACATAAGCTGTATGTTTATTGACAGCTTATTATCATTAACAGCAATATGAGCAGTGTTCTGGGTAGCAATTTGTAATACTGATGACTCATTATCCTCATGAAGCCTGGACAAACATTTTACCACTTTACATTTACAAACCCCATTTGgagtaaagtattttttaaagagTGCAAAAAAAACCTGATGCATGGTAGAAATGGATAAGAAATGTTTTGTGCTGCATGCAATAATTGAGCTTTGCTTGAAAATGTTTATGCAGAAATGTGATGACACTAAATCTATGAGTGGACCAGTGTTGTGACTTTCTTTTTAAATGCATGGAATCCCAAAGTTGATCTCTACTGTAAATTATTCACAGACGTGTTCATTGAGAAATGTTTGATTACTGTATGATGGAATTGTAACAAGTTTGTTCTTCAAGAGGCAAAGTCAGATGCAGTGTTTTAGCAAAGTCTTAACAATTGTGAGTTGAAACGGGAAAAACTATTTGTGTTATGTTCAATGCAAATAATATTGCAGAATATAAGTTAATATGCTTTGCAGACCTGATTTGCGTTGCTGATTTTGCCTCTGAATGTGAAACTCTATGCTTAGTCTGATCTATGCACTACAGAAGCGTCCCGCATGGTTttgtacaaaatattaaattttagcaataaaaaaaagCAGCATGGTGCCAATCATAA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:1990399 epithelium regeneration biological_process
GO:0060429 epithelium development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-LINCRNAG-030131-2500 Is expressed in central nervous system; notochord; testis; and unfertilized egg. Orthologous to human OIP5-AS1 (OIP5 antisense RNA 1).

Ensembl:

ensembl_id ENSDART00000139872

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 251492 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 264635 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 453490 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 638608 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 641005 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013865 lncRNA upstream 184853 33452438 ~ 33463644 (-) True XLOC_006757
TCONS_00013866 lncRNA upstream 189938 33457523 ~ 33459318 (-) True XLOC_006758
TCONS_00013013 lncRNA upstream 349426 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013014 lncRNA upstream 353685 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013018 lncRNA upstream 392123 33659708 ~ 33662432 (-) True XLOC_006761
TCONS_00013000 mRNA downstream 4464 33251721 ~ 33256667 (-) True XLOC_006751
TCONS_00012999 mRNA downstream 14977 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00012998 mRNA downstream 33720 33211014 ~ 33227411 (-) True XLOC_006749
TCONS_00012997 mRNA downstream 53764 33199929 ~ 33207367 (-) True XLOC_006748
TCONS_00012996 mRNA downstream 62981 33196801 ~ 33198150 (-) False XLOC_006748
TCONS_00013004 mRNA upstream 47088 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013005 mRNA upstream 47090 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00013006 mRNA upstream 47262 33314847 ~ 33317326 (-) True XLOC_006753
TCONS_00013007 mRNA upstream 52478 33320063 ~ 33321058 (-) False XLOC_006754
TCONS_00013008 mRNA upstream 53019 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00012961 other downstream 665911 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1566084 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1614125 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1681567 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1820191 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 344118 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 392123 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1371044 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1376565 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1915409 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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