RNA id: CI01000003_01356590_01360272.mRNA



Basic Information


Item Value
RNA id CI01000003_01356590_01360272.mRNA
length 2706
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000003_01356590_01360272
representative True

Chromosome Information


Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1356477 ~ 1360348 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAGAGCCCAGGAGAAATATGACCTGCTCTTTTTATATTAGGCCTATATGTTACAGCGCACATCTCCTCGCCACCAGATGTGCAGATGAGTGCACAACTCTTCAGTAGTCATGGTGTCCTACATCACAGACTGCATTGAAAAGCCCATACGGATGTGTTTTGAACGTTTCGGTAAGTTCGTAGGGCTTCACCCGTGGTGGTTTGTCACTTTACCGCTGGTGGTGTCCGCAGGTCTCGGAGGAGGATTTTACTTTCTGAATGACCTGAAATCCAACGACATAGTGGAGCAGTTTACTCCGAAAAACGGCCGCGCTAAAGTGGAGAGGCGTTTCTTTCAAGAAACTTTTCCACAAATTGACTCACAGTTTTCAATTATACGATTAATCACTGACGGGGTTTTTGCATCTTTGATATTCTCCTGTCAGACAAACATACTCAGTGTTGCTGCACTAGAGGAGGTCATCCGCATCGATGGACAAGTCAGAGGAATCACCGCAACTTACGACGCACAACAATTTTTGTTCTCGGATATTTGCGCGAATGTGAACGGAACATGCAACTCTAACGTAATGCTTGATGTTTTAAATTATAATGCAAGCAACATTAATTTTGTCAACATAACGTATCCTGAGTACTGTCCGTCCGAATTCAAATGTCTCCACATGGGAAATGTCATCAGTGAGGTGGAGGTGGATCACAATGGAGTTGTTCAAAGTGCCAAAGCAATGAGACTTTTCTATTATTTAAAAGAGAGCAATAAAACACTGGGAGAAGCCTGGCTTCAAGAGTTGATAGACTTTCTGTCGAATGTAACGACCTCTGCAACAGAAGTATCCTATTTTACCTCCATGTCAAGACAACAGGAGTTTGAGAAGAGTACCCAATCTGTCACTGAACTTTTTGCAATTACTTACTTTCTTGCCATCTCATTTTCAGTAATATCTTGCCTGAGGTTTGACAATGTGAGGAATAAAGCGTGGGTGGCTTCTCTTGGAGTTTTTTCCACTGCACAAGCAGTGCTGTCCAGCTTCGGGCTGCTGTTACTCATGAATGTGCCATTTGTTATTACTGTGGCATCTTCTCCATTCCTGATTCTTGGAATCGGTATCGATGACATGTTTATCATGATCTCCAGCTGGCAACGAACCAACATTCAAGACACAGTGCCAGACCGTATGGCTGATACCTACAGGGAGGCAGCCATTTCCATTACTATCACCACCCTGACTGACGTGCTAGCCTTCTACCTCAGCTATGGTAACCCCTTTGGCTCAGTTCAGTCTTTCTGTTTTTATGCGGGCACGGCCATCTTGTTCTGCTACTTCTATAACATCACTTTCTTTGGAGCTTGTCTGGCTCTGAATGGCAGAAGGGAGGGGGCGAACAGACACTGGTTAACTTGCATGAAGGTCCCAGAGGAGGTCCCACCAGGACGGTCTAAAGCATACGCTGTCTGCTGTCTCGGAGGATCTTACAACCATGACACAGGAACCGAGGAAGAGCACCCAATGACATTGTTCTTCAGGAAGTACTATGGACCATTTTTGACAACAGTTTGGAGTAAAGCAATAGTAGTTTTTATCTACTTAGTATACATTGCTGTTAGTGTTTATGGCTGCCTGCAGCTCAAGGAAGGCATTGATCTCAAGAACCTAGCACTTGATAAGTCCTACATTGTCCAATACTATGAGGCTGAGAAGACATACTTTCATTATCATGGCCCAAATGTAATGTTAGCCATCAATGGCACATTTCCATATTGGGAGGAGAATGAACGTAATCAACTTGAGTCTTGTATTATGCAATTTCAGGAACTGAATTCTGTCAAGAACTTGTCCACATCTTGGCTTCATTCCTTCGAAAAGCATGCAGAGGAACATGGTAATAACATCAGCACAGAAGCTACATTTAAAACACATCTGTATCAGTTTTTGGACCACCATCCAGTGCTCAAACAGGATGTCAACATAACCAATAATGACATAGTTGCTTCACGTCTGTTTCTTCAGACAATTGTTCAGAACTTCACAGAGAAGAACATGTTGAACTCACTACGGAAGAGAGCAGAGAGCTGCCTGTGTCCACTGTTGGTCTACCATCCAGCGTTTATATACCACGATCAGTATACTGTAATAGGGCATATCACTCTTCAGACCGTCACGGTGGCAACCGCAGTAATGCTGGCCATCTCTCTTGTGCTGATTCCAAATCCTCTTTGCGCCTTGTGGGTGGCCTTTGCAATTGCTTCAGTTATTTTGGGAGTCACCGGCTTCATGGCACTGCTAAACATTAGCCTTGATTCAATCTCCATGATAAACTTGGTCATTAGCATCGGCTTCTCCGTGGACTTCTCTGCTCATATCTCCTATACGTTCGTGTCCAGTACTAAGCCCGATGTGAACGAGAGAGTTGTGGAGGCACTGACGCACCTGGGCTACCCCATACTTCAAGGGGCTCTTTCTACAATTGTGGGTGTGGTGGTACTTTCAGCTTCCAGTAGCTACATATTCAGAACCCTCTTCACCATCGTGATGCTAGTCATTACTTTTGGGTTGCTTCATGGTATCGCTTTTATTCCAGTATTTCTTACTTTCTTTGGATTTTGCCACAAGTTGCAGCAGCACTGAATTTAAATATTAAACTAATTTTCTTCAAATCTCCTCTCTAATTTTTAATTTAATTGTAAAATTATCATTTTACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU26204 lncRNA upstream 10903 1345273 ~ 1345574 (+) True G23217
TU26152 lncRNA upstream 28602 1327563 ~ 1327875 (+) True G23175
TU26018 lncRNA upstream 133815 1176830 ~ 1222662 (+) True G23056
TU25999 lncRNA upstream 285969 1070290 ~ 1070508 (+) True G23039
TU25548 lncRNA upstream 427330 928942 ~ 929147 (+) True G22641
TU26210 lncRNA downstream 17711 1378059 ~ 1378355 (+) True G23223
TU26229 lncRNA downstream 125834 1486182 ~ 1486398 (+) True G23242
TU26231 lncRNA downstream 144201 1504549 ~ 1504981 (+) True G23244
TU26234 lncRNA downstream 147902 1508250 ~ 1508470 (+) True G23246
TU26240 lncRNA downstream 181781 1542129 ~ 1542436 (+) True G23251
CI01000003_01329453_01342093.mRNA mRNA upstream 13805 1329453 ~ 1342672 (+) True CI01000003_01329453_01342093
CI01000003_01280201_01309764.mRNA mRNA upstream 46352 1279767 ~ 1310125 (+) True CI01000003_01280201_01309764
CI01000003_01258265_01259530.mRNA mRNA upstream 96926 1258265 ~ 1259551 (+) True CI01000003_01258265_01259530
CI01000003_01140472_01168860.mRNA mRNA upstream 187577 1140342 ~ 1168900 (+) True CI01000003_01140472_01168860
CI01000003_01126525_01129929.mRNA mRNA upstream 226152 1126098 ~ 1130325 (+) True CI01000003_01126525_01129929
CI01000003_01382733_01410162.mRNA mRNA downstream 22100 1382448 ~ 1410190 (+) True CI01000003_01382733_01410162
CI01000003_01430247_01451033.mRNA mRNA downstream 69899 1430247 ~ 1451626 (+) True CI01000003_01430247_01451033
CI01000003_01489211_01493471.mRNA mRNA downstream 127489 1487837 ~ 1494025 (+) True CI01000003_01489211_01493471
CI01000003_01561017_01590804.mRNA mRNA downstream 200565 1560913 ~ 1590923 (+) True CI01000003_01561017_01590804
CI01000003_01728663_01761628.mRNA mRNA downstream 368104 1728452 ~ 1762479 (+) True CI01000003_01728663_01761628
TU25485 other upstream 431229 924803 ~ 925248 (+) True G22578
TU25360 other upstream 961263 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 1167038 179531 ~ 189439 (+) True G22420
TU26311 other downstream 502920 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 502920 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 504260 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 920312 2280660 ~ 2285641 (+) True G23870

Expression Profile


CI01000003_01356590_01360272.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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CI01000003_01356590_01360272.mRNA Expression in each Bioproject

Bar chart with 29 bars.
CI01000003_01356590_01360272.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.