RNA id: CI01000003_01797491_01803265.mRNA



Basic Information


Item Value
RNA id CI01000003_01797491_01803265.mRNA
length 3039
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000003_01797491_01803265
representative False

Chromosome Information


Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1796621 ~ 1806332 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAACAGGCGATCTGCGTAAACGGTACTGCATCTTCAAACTAGAGGTAATGCATTCATTCTTACTTATTTAACTGTTTATTGTTTTAATTGTTTCGTTTTAAGCACTTCAGTTTATTGTGTTTAAATCATAGACTGTAAAAGGATTAAATCTGAATATGAAAGCTGTGTCTCGCGATATATGCATAAAATCGCGAGAACTTGTTGCTCCTGTTGTCAGTTCTGCAGACTGGAAGTTGAACTTACCTTGCAGGTCTTGTTTTTCACTTTGCATTGTTTATTATGAATCGCTAACTCTCTAACTGCATCACGCCGTGCGATTTAAGAATAACAGTTAGTTACATTGCATGCTAATCGTCTGTTGTGTGACTTTTTAAACGATTGTTAAAGGAAGTCTCGCAGTCCGTGCAGTAGTTCTGTGTTCAGTTACATATATACTTAAGCTACTAATAATGTTGCAGCGTTAAATACTGGGTTTATTAAACCAGGTATTGGAACTGTTAAGATTCTCGACGGCACGTGCGTACATCTTCATGCATGCATTTGTTTACATGTATTGCAAGTGCATTTACTTATGTAAGCGTAGTTGGAAATTAAATAAACAGCATATGTGCAGTCTTCAATCAGCGCGAAGTCCAAACCACCAAGGCGTGTCTAACCCATTACACGAGACACCAAAGATGAGTCTTTATACAGCAGCCTACAGCCAAACATTCACTTCTTCTTCAAACAAACAATTCTTTCTTTCTTGGTTCAAAAAAAGTTAGGGGTTTAAAAAAATTTTTATACTTTAAATCAAATTTCGCACTGTACAAATAGTATTGTATTAATGAATATAACTATTTGTTGGACAGGATCACCAGAATCATGTCTGAGCAGAGCGGCAAGGTCCAAACAGTGCTGGGTCTGATAGAGCCTGATCAGCTGGGCCGCACCATGACACATGAACACCTTACCATGACATTTAAGTGCAGCCATGTTCCTCCAGCACCTGGAGATGAGGGTCTTGCCATAGCTCCCATTGAAATGAAGCATATTCACTGGTTGCAGCAGAATCCATACAGCCACCAAGAAAACCTGCTGTTGAATCAGGAGATTGAGGCGGTGAAGGAAGAGTTGCTGTGTTACCGTAAAGCAGGAGGAGGATCCATAGTGGAGAACACCACCACGGGCATCACACGAAACCTGCCCGTTCTGCGTCAGTTGGCGAAGGAAACGGGTGTGCATGTCATAGCTGGAGCAGGGTACTATGTGGATGTGACCCACTCTGATGAGACACGAAAGATGACCGTTGAGAAGCTTACTGACATTATTGTCAGTGAGGTTCTCCATGGAGCAGACGGCACAGATATCCGCTGTGGCGTGATTGGAGAGATCGGTACTAGCTGGCCAATCACAGAGAGTGAGAAAAAGGTCCTGCGAGCCACTGCCCACGCTCAAACTCAGCTCGGCTGCCCGGTTATCATTCACCCTGGGCGGAATGAAGCCGCTCCTGGAGAGGCCATCCGCATTCTGCAAGAAGCAGGTGGAGATATCTCCAAAACAGTCATGTCTCATCTTGATAGAACCTTGTTAGATCGTCTAGAGCTGCTGGAGTTTGCAAAGATGGGAAGCTACCTTGAATATGACCTCTTTGGCACAGAGATTCTAAATTACCCATTCAACCTTGGTATTGACATGCCCAGCGACAGCCAGAGAGTTCAGAGCTTGGCTTTCCTGATCAAGGAAGGTTACGAAGACAGAATCCTCATCGCTCATGATATCCACACCAAGCACCGACTGACCAAGTATGGTGGTCATGGCTTCTCCCACATCCTGAACAATATTGTTCCCAAAATGTTGTCTCGAGGAATCACTCAGAACCAGGTGGACAAAATACTGATAGAGAATCCTAAACACTGGCTGACATTTAAATAAATCAACTGCCTTAAAAGCCGATTTACTTCAAGTTAACGTACCAAAAATTGATTTCTAACTTTTATTGTTAAAAGGGTTAGTTCACCCGAAAATAAAATTATCCCATATTTTTCTCACCCTCAAGCCATCCTAGGTGCATATGGCTTTCTTCTTTCAGTCAAACACAATCGTTATATTAAAAAATATTCTGGCTCTTTCAAGCTTTATAATGGGAGTGAATAGTAACCGAGATTTTGAAGCCCAAAAAAAGCACATTCATCCATAATAAAAGTAATCCATACGGTTCCAGGGGTTAATAAAGGCCTTCTGAAGCGAAGTGATGCGTTTTTGTAAAAAAAAATATCCATATTTATAACTTTTATAGACTATAATCACTAGCTTCCGGTAGTAACGTAAGCTTAGGTGAAAGTAGACGCCTCTCGCAGTTCAAACAATTAGAGTTGGGCAACAAACTCAAGCTCCTCTGACATTTCTTTTTAAAAATTCTAATTTTAGACTTAATTTGTGACTGGTGTTTTGTTTTGCTCTATCCTCTGCACTTCCGCGTTTGTCAATATTTCGTGCATCAGGTCAAAGTTCGCTTTCATCGGAATCAACTCGCGACCCAGTGATTCTAGGTTATAAAGTTATAAATATGGATATTTTTCTTACAAAAACTTATTGCTTCACTTCAGAAGGCCTTTATTAACCCCCGGAGTCATATGGATTACTTTTATGATGGATGGATGTGTCTTTTTGGGCTTCAAAATTTCAGTTACTATTCACTCTAATTATAAAGCTTGGAAGAGCCAGAATATTTTTTTAATATAACTCCGATTGTGCTTGACTGAAAGAAGAAAGTCATATACACTTAAAATGGCTTGAGGGATCATTTTTATTTTTGGGTGAACTAACCCTTTAAGAACATTTCTGTCCAGTTGATTTTGGTGCTAAATTCTTTGGTGATCTGAAGAGTCAACATTTTTTGGTGAACATTAATCTACATAAGATGGCAGAGTTGGGACCAATAGATCACACATAGATTTAACACTAACTAGACTTAATAGGTTCAGATATTCAAATCAAATATTACCCAGGCTTCAATGATTAAAGTTCTCTCACCACAAACAAGTGGTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU26295 lncRNA upstream 5895 1790370 ~ 1790726 (+) True G23301
TU26298 lncRNA upstream 68437 1727980 ~ 1728184 (+) True G23304
TU26286 lncRNA upstream 75681 1720700 ~ 1720940 (+) True G23295
TU26182 lncRNA upstream 111785 1614613 ~ 1684836 (+) True G23195
TU26171 lncRNA upstream 167122 1616966 ~ 1629499 (+) True G23186
TU26338 lncRNA downstream 21185 1825569 ~ 1825796 (+) True G23339
TU26340 lncRNA downstream 23097 1827481 ~ 1827842 (+) True G23341
TU26342 lncRNA downstream 26094 1830478 ~ 1831444 (+) True G23343
TU26343 lncRNA downstream 27123 1831507 ~ 1831766 (+) True G23344
TU26324 lncRNA downstream 29095 1833479 ~ 1834803 (+) True G23325
CI01000003_01728663_01761628.mRNA mRNA upstream 34142 1728452 ~ 1762479 (+) True CI01000003_01728663_01761628
CI01000003_01561017_01590804.mRNA mRNA upstream 205698 1560913 ~ 1590923 (+) True CI01000003_01561017_01590804
CI01000003_01489211_01493471.mRNA mRNA upstream 302596 1487837 ~ 1494025 (+) True CI01000003_01489211_01493471
CI01000003_01430247_01451033.mRNA mRNA upstream 344995 1430247 ~ 1451626 (+) True CI01000003_01430247_01451033
CI01000003_01382733_01410162.mRNA mRNA upstream 386431 1382448 ~ 1410190 (+) True CI01000003_01382733_01410162
CI01000003_01863421_01867859.mRNA mRNA downstream 58470 1862854 ~ 1867928 (+) False CI01000003_01863421_01867859
CI01000003_01889537_01891879.mRNA mRNA downstream 85114 1889498 ~ 1892071 (+) True CI01000003_01889537_01891879
CI01000003_01893593_01901539.mRNA mRNA downstream 89209 1893593 ~ 1901769 (+) True CI01000003_01893593_01901539
CI01000003_01907347_01909263.mRNA mRNA downstream 102738 1907122 ~ 1909600 (+) True CI01000003_01907347_01909263
CI01000003_01921110_01928830.mRNA mRNA downstream 116453 1920837 ~ 1929621 (+) True CI01000003_01921110_01928830
TU25485 other upstream 871373 924803 ~ 925248 (+) True G22578
TU25360 other upstream 1401407 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 1607182 179531 ~ 189439 (+) True G22420
TU26311 other downstream 58884 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 58884 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 60224 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 476276 2280660 ~ 2285641 (+) True G23870

Expression Profile


CI01000003_01797491_01803265.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

CI01000003_01797491_01803265.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_01797491_01803265.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.