Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU26312 |
| length | 245 |
| RNA type | TUCP |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G23315 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 1863892 ~ 1866921 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26322 | lncRNA | upstream | 4054 | 1858488 ~ 1859214 (+) | True | G23323 |
| TU26321 | lncRNA | upstream | 5767 | 1855877 ~ 1857501 (+) | True | G23322 |
| TU26325 | lncRNA | upstream | 8100 | 1854305 ~ 1855168 (+) | True | G23326 |
| TU26345 | lncRNA | upstream | 11590 | 1851281 ~ 1851678 (+) | True | G23346 |
| TU26317 | lncRNA | upstream | 14199 | 1843088 ~ 1849069 (+) | True | G23318 |
| TU26378 | lncRNA | downstream | 85200 | 1953337 ~ 1953707 (+) | True | G23379 |
| TU26384 | lncRNA | downstream | 110892 | 1979029 ~ 1979593 (+) | True | G23383 |
| TU26355 | lncRNA | downstream | 161395 | 2029532 ~ 2047851 (+) | True | G23356 |
| TU26829 | lncRNA | downstream | 271151 | 2139288 ~ 2139544 (+) | True | G23770 |
| TU26830 | lncRNA | downstream | 271408 | 2139545 ~ 2139868 (+) | True | G23771 |
| CI01000003_01797491_01803265.mRNA | mRNA | upstream | 58884 | 1796621 ~ 1804384 (+) | False | CI01000003_01797491_01803265 |
| CI01000003_01728663_01761628.mRNA | mRNA | upstream | 100789 | 1728452 ~ 1762479 (+) | True | CI01000003_01728663_01761628 |
| CI01000003_01561017_01590804.mRNA | mRNA | upstream | 272345 | 1560913 ~ 1590923 (+) | True | CI01000003_01561017_01590804 |
| CI01000003_01489211_01493471.mRNA | mRNA | upstream | 369243 | 1487837 ~ 1494025 (+) | True | CI01000003_01489211_01493471 |
| CI01000003_01430247_01451033.mRNA | mRNA | upstream | 411642 | 1430247 ~ 1451626 (+) | True | CI01000003_01430247_01451033 |
| CI01000003_01889537_01891879.mRNA | mRNA | downstream | 21361 | 1889498 ~ 1892071 (+) | True | CI01000003_01889537_01891879 |
| CI01000003_01893593_01901539.mRNA | mRNA | downstream | 25456 | 1893593 ~ 1901769 (+) | True | CI01000003_01893593_01901539 |
| CI01000003_01907347_01909263.mRNA | mRNA | downstream | 38985 | 1907122 ~ 1909600 (+) | True | CI01000003_01907347_01909263 |
| CI01000003_01921110_01928830.mRNA | mRNA | downstream | 52700 | 1920837 ~ 1929621 (+) | True | CI01000003_01921110_01928830 |
| CI01000003_01956459_01966449.mRNA | mRNA | downstream | 88264 | 1956401 ~ 1966455 (+) | True | CI01000003_01956459_01966449 |
| TU25485 | other | upstream | 938020 | 924803 ~ 925248 (+) | True | G22578 |
| TU25360 | other | upstream | 1468054 | 391013 ~ 395214 (+) | True | CI01000003_00390997_00406970 |
| TU25282 | other | upstream | 1673829 | 179531 ~ 189439 (+) | True | G22420 |
| TU26952 | other | downstream | 412523 | 2280660 ~ 2285641 (+) | True | G23870 |
