RNA id: TU26310


Basic Information

Item Value
RNA id TU26310
length 327
RNA type TUCP
GC content 0.43
exon number 2
gene id G23315
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1863892 ~ 1866921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCAGTAACCGATAGTCGTGGGGGAAGATGCGTTGGTTGCCTCTTTCGGTTGTAATATTATGGGCCTGTTCTCTTTACAGTGCCTCTGCGGATAACAATGGCGTAAAGAAGATGAAGATGCAGTTTGCCACTGGTCCACTTCTCAAATTCCAGATTTGTGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCAGGTTTTGTACCAGCGGTACCCAGACATCCGCATAGAAGGAGAGAACTACCTTCCACTGCCTATCTACAGGCACATTGCTTCCTTTATGTCTATGTTTAAGCTGTTTTTAATTGGAGTGATCATTCTAGGCAAAGATCCATTTGCCCTATTTGGTATGCAGGCTCCAGGCATCTGGGTTTGGAGTCAGGAGAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAATCAATGTATGTCTACGGGTGCTTTTGAAATCACACTCAATGATGTTCCAGTTTGGTCCAAGCTGGAGTCAGGCCACCTGCCTTCCATGCAGCAACTAGTTCAAATTCTGGAGAATGAGATGAAGATGAACGTGCACATGGACACACTTCCACACCATCGCTCGTAACCTTGCCTCTGATTCACTGAATGGAGCCTAGAACCCCTCCACTTTTGTGGTGAAGCTCTCCTACGGTTGTGAGGTGACGTTTATGAAGGTTTGCGCTGAAAGTAGAGCCTCTGCTAGCGCACGCCCGATGTTCTGCGTTCTCCTCACCATGCCCCTCGGAGATGCACCACCTACAGACGCTGGTGCGGGATCCATGGCAACAACAGTGGCCATATAAATATGACTGCAGCCCATCTCTTGTGCAATAGCCATTTGTTTCTGGATATATGTTCACAAGAAATATGTAATAAATCTTTTCTATTTGAGTTCAGTTTGCTCAGTCAACAGAATTTATGATGGCATATATTCCTTTCATTTGATCCTAATGTATGACTAAATCCTGGTCTTTATGTTTTATTTAATAAGTTGATATGAGAAGCTTCTAACTTATACAGCTAATCCCCATCATGATAATTTAACATTTAAGTAACATTAATTATATTTCTGAGCCCTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26322 lncRNA upstream 5394 1858488 ~ 1859214 (+) True G23323
TU26321 lncRNA upstream 7107 1855877 ~ 1857501 (+) True G23322
TU26325 lncRNA upstream 9440 1854305 ~ 1855168 (+) True G23326
TU26345 lncRNA upstream 12930 1851281 ~ 1851678 (+) True G23346
TU26317 lncRNA upstream 15539 1843088 ~ 1849069 (+) True G23318
TU26378 lncRNA downstream 85200 1953337 ~ 1953707 (+) True G23379
TU26384 lncRNA downstream 110892 1979029 ~ 1979593 (+) True G23383
TU26355 lncRNA downstream 161395 2029532 ~ 2047851 (+) True G23356
TU26829 lncRNA downstream 271151 2139288 ~ 2139544 (+) True G23770
TU26830 lncRNA downstream 271408 2139545 ~ 2139868 (+) True G23771
CI01000003_01797491_01803265.mRNA mRNA upstream 60224 1796621 ~ 1804384 (+) False CI01000003_01797491_01803265
CI01000003_01728663_01761628.mRNA mRNA upstream 102129 1728452 ~ 1762479 (+) True CI01000003_01728663_01761628
CI01000003_01561017_01590804.mRNA mRNA upstream 273685 1560913 ~ 1590923 (+) True CI01000003_01561017_01590804
CI01000003_01489211_01493471.mRNA mRNA upstream 370583 1487837 ~ 1494025 (+) True CI01000003_01489211_01493471
CI01000003_01430247_01451033.mRNA mRNA upstream 412982 1430247 ~ 1451626 (+) True CI01000003_01430247_01451033
CI01000003_01889537_01891879.mRNA mRNA downstream 21361 1889498 ~ 1892071 (+) True CI01000003_01889537_01891879
CI01000003_01893593_01901539.mRNA mRNA downstream 25456 1893593 ~ 1901769 (+) True CI01000003_01893593_01901539
CI01000003_01907347_01909263.mRNA mRNA downstream 38985 1907122 ~ 1909600 (+) True CI01000003_01907347_01909263
CI01000003_01921110_01928830.mRNA mRNA downstream 52700 1920837 ~ 1929621 (+) True CI01000003_01921110_01928830
CI01000003_01956459_01966449.mRNA mRNA downstream 88264 1956401 ~ 1966455 (+) True CI01000003_01956459_01966449
TU25485 other upstream 939360 924803 ~ 925248 (+) True G22578
TU25360 other upstream 1469394 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 1675169 179531 ~ 189439 (+) True G22420
TU26952 other downstream 412523 2280660 ~ 2285641 (+) True G23870

Expression Profile

TU26310 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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TU26310 Expression in each Bioproject

Bar chart with 44 bars.
TU26310 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031908 True 1301 mRNA 0.42 6 NC_007113.7 9684305 ~ 9696283 (-)
rainbow trout (Oncorhynchus mykiss) TU158548 True 335 lncRNA 0.36 1 NC_048566.1 36905465 ~ 36905799 (+)
rainbow trout (Oncorhynchus mykiss) TU2430274 True 1175 lncRNA 0.49 6 NC_048592.1 29265047 ~ 29269424 (+)
eurasian perch (Perca fluviatilis) TU158548 True 1861 lncRNA 0.42 6 NC_053122.1 24863027 ~ 24870087 (+)
eurasian perch (Perca fluviatilis) TU186879 True 1830 lncRNA 0.41 2 NC_053124.1 36184037 ~ 36193304 (+)
bowfin (Amia calva) TU71005 False 1092 lncRNA 0.47 6 CM030126.1 37281218 ~ 37285365 (-)
mexican tetra (Astyanax mexicanus) TU186879 False 1209 lncRNA 0.48 6 NC_035912.1 3115442 ~ 3119483 (+)
mexican tetra (Astyanax mexicanus) TU158548 True 764 lncRNA 0.48 9 NC_035909.1 41356722 ~ 41359883 (-)
mexican tetra (Astyanax mexicanus) TU71005 True 1255 lncRNA 0.35 2 NC_035902.1 16622749 ~ 16677399 (-)