RNA id: CI01000003_02101903_02151773.mRNA



Basic Information


Item Value
RNA id CI01000003_02101903_02151773.mRNA
length 1753
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000003_02101903_02151773
representative True

Chromosome Information


Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2100815 ~ 2151976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATATTCCAAATAGTGTTTATTTGAAGGCTCATTCCAGTGTCTTCTATACTTCCATTGTATATGCATTACTGAAAACATGATTTTGGTTGCATTTATATGCATGAAAAACAAGTCGAAATTATTTTCTATGGCACAGATGAGCTTCGAAAACTTCACTTGTATTTAGCTATAACAATTGTGCCCTCCAAAAATAAAAATTATTTGTTGTTCCAACACTGCAAAAAAAATCTCTTCTTAATAATAATAATAAAAAAAAAAAAAAAAGGAGATTAAAATTGGCACATTTACTTTTGGAAAACAAAAAGAAGATATTTTGAAGAATGTATTTTGAAGTGTTTATGTCAGAACGCCGACTCATTATTGGCCGGCTCCTGCGTCAGCAACACACGCATGCGTCGTGCCACGTGACCAGAGCTGGCCAAGACTGAGCCGCCGTTCAAACGTAAACACTGAAGCTCTGCAAGGAAAATAGCATAGCAGTATGACAGGGGACAGACAAATTTGTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGTGCACAAAAAGTGTTGTCGTCGCTTCATAATATTAAGGTTGAACCACTATAGTCACGTCGCCGGTTTTAATGACGTCTTTAGTACCTTTCTGGACCTCAAAAGGTGCAATGCCATTGCTGCTGCCTGCGTGTGGATCAGATACCCTCGGATTTAATCAAAAATATCTTAATTTGTGTTCCGAAGACAAACTAAGGTCTTACGGGTTTGGGATGACATGAGGGTGAGTACTTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAAATTTCAGTTCACACATAGTCTTCAGCCTGGAATACCTGGAATATAGCACACTGGTTGTATGGACTATTTTTGTGGTGTTTTCCTTTTTAGAGTTTATCATTCATGTTCAAGATGAACTGTATGGAAAAGAACTACATGAACATTCTTCAAATTCTCTTCTTTTGTCACAGAAAAAAATAACAGCATATGGGTTTTCATTGTTGGGTGAACTATCCCTTTAGGTTTCTTTAGCTACCAGAGAAGCTGTCATTAAGGGTTGTTATGTTCAGCTGAACAATGTCTCAGAAACTGTATGAATGGCAATTTAATGGTGCACAGAGCAGAGGAGGGATTCAGTCGGGGTCGTACCTGAGCACCGGCTGGTTCACCCTCATACTGGCCATGGACATGTGCAAAGAGATCCGAGTCTACGGAATGATCAATGACACATACTGCAAGAATATTCCAGCTGGCTTCAGGATGAAGACACCAATGCGTCATGGAGTAGCCGTGTTTCTCGCGATCACCATGTGCACCAGTCTGTTGTTCGTGTACAGCGTCAGCTATAATAATAATACTACAGCATCCAGCGCGTCAAAGGGCGCGTCAGGTGAGAAAGTGGAGCCCACCAGAGCGCCGCGCGCGCCTCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCCATAATAGTGTTACAATTGGTTCCACTGTTACATAGAGAAAACGGTTTGAGCATTATGATTGACCTTTAAGCCTGATCATAACTTGCAATCTGCACTTTATGTACTGTAGCCATTTTGTGCTTAACAGTCCAAATATAATGGGGGAGAGGGTTTGCGATACTATTGTGTTAGATCGGATTGGTTGTTATTGGTTGTTATATCTAACTTTTAATGTATACTTTTAAAGGATTAACCATGAAGCTGGGCTTGATTAACTGGAAACTGATCTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU26355 lncRNA upstream 52964 2029532 ~ 2047851 (+) True G23356
TU26384 lncRNA upstream 121222 1979029 ~ 1979593 (+) True G23383
TU26378 lncRNA upstream 147108 1953337 ~ 1953707 (+) True G23379
TU26322 lncRNA upstream 241601 1858488 ~ 1859214 (+) True G23323
TU26321 lncRNA upstream 243314 1855877 ~ 1857501 (+) True G23322
TU26861 lncRNA downstream 48718 2200694 ~ 2200936 (+) True G23787
TU26864 lncRNA downstream 55129 2207105 ~ 2207635 (+) True G23789
TU26953 lncRNA downstream 138370 2290346 ~ 2291021 (+) True G23871
TU26976 lncRNA downstream 301602 2453578 ~ 2454181 (+) True G23893
TU26984 lncRNA downstream 303033 2455009 ~ 2456866 (+) True G23898
CI01000003_02070747_02072861.mRNA mRNA upstream 27426 2070747 ~ 2073389 (+) True CI01000003_02070747_02072861
CI01000003_01982406_01992219.mRNA mRNA upstream 107971 1982336 ~ 1992844 (+) True CI01000003_01982406_01992219
CI01000003_01969544_01973134.mRNA mRNA upstream 127681 1969330 ~ 1973134 (+) True CI01000003_01969544_01973134
CI01000003_01956459_01966449.mRNA mRNA upstream 134360 1956401 ~ 1966455 (+) True CI01000003_01956459_01966449
CI01000003_01921110_01928830.mRNA mRNA upstream 171194 1920837 ~ 1929621 (+) True CI01000003_01921110_01928830
CI01000003_02175343_02190917.mRNA mRNA downstream 22814 2174790 ~ 2193320 (+) True CI01000003_02175343_02190917
CI01000003_02259112_02344710.mRNA mRNA downstream 107136 2259112 ~ 2344710 (+) True CI01000003_02259112_02344710
CI01000003_02422051_02446833.mRNA mRNA downstream 270075 2422051 ~ 2446837 (+) True CI01000003_02422051_02446833
CI01000003_02466819_02469433.mRNA mRNA downstream 314843 2466819 ~ 2469631 (+) True CI01000003_02466819_02469433
CI01000003_02510102_02514782.mRNA mRNA downstream 358126 2510102 ~ 2514969 (+) True CI01000003_02510102_02514782
TU26311 other upstream 232678 1863892 ~ 1866921 (+) False G23315
TU26312 other upstream 232678 1864690 ~ 1866921 (+) True G23315
TU26310 other upstream 232678 1864608 ~ 1866921 (+) True G23315
TU25485 other upstream 1175567 924803 ~ 925248 (+) True G22578
TU25360 other upstream 1705601 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU26952 other downstream 128684 2280660 ~ 2285641 (+) True G23870

Expression Profile


CI01000003_02101903_02151773.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

CI01000003_02101903_02151773.mRNA Expression in each Bioproject

Bar chart with 40 bars.
CI01000003_02101903_02151773.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.