RNA id: CI01000003_02422051_02446833.mRNA


Basic Information

Item Value
RNA id CI01000003_02422051_02446833.mRNA
length 2143
RNA type mRNA
GC content 0.48
exon number 16
gene id CI01000003_02422051_02446833
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2422051 ~ 2446837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGGAGGACGTGTTCAGAATCTCACACGTGTCCATGAAGGTGGCCGCTTTGCACTTTGTGGACCTGCCACTGTCCGTCTATTACTCCCTTCCACAGGTGAGTCTGAGCACCGGCACCAAGAAGCTCTTTGCAGCCACTGCCTTTGGCGCAGTCTCCCTCATCTTCCTCGCACGACGCTTCAGGAGGAGGAAGGGCAAGAAAAAAGCCAGTTCACCTGTAGAGCAGGAAACGTTTGAGTTCTTCACCACTGTCCCCCTGAAAAAAGAGACTGACTGTCAAAATCTGCCTCTGACCTCAAAGAACTGCTACTCATGTAATGTGGTGTCCAGTGGCGGCCTGTACTGCAAGCTTTCGGGCTCACTGCAAAGCCTGGCCTCTGTGAGGAGCAGGCACTCTTCCAGTAGCTCCACCTGTGCTAATGGATCCAGCTGCTGGGACGGAGCAGGAGATGATGGTGATGTCTGTAATCTGCTCAACATCCCCGTTGCTACTCCAGAGAATCTTTACCTGATGGGAATGGAGTTGTTCGAGGAGGCCCTGCGGCGCTGGGAGCAGGCACTAACATTCCGCAGCAGGCAAGCAGAAGATGAGGCGAGCTGTGCATCTGTGAAGCTGGGAGCTGGAGATGCCATTGCAGAAGAAAGCATGGAGGACATCATCAGTACAGATTTCATCCGAAAGCTGGAGTCTCTGCTACAGAGAGCCTATCGGCTCCAGGAGGAGTTTGAGGGAGCGCTGGGAATGACAGACCCTGTAACACATCCTAGTAACGACAAGCACATGGATCTCTCCGTGTGTGAGGACTTGGAGGACACATGTCTCAGAGATTCAGTCAGCATCGCCTCAACAGATTCTTTCGTGTCTGCCGCAGAGTTATCTGAGCACAGAGAGATGAGGAGTGCCCATGCACTCTGTCATCACCCCTTCTATGAGGACGCCCTGCATATGGCTGAGGAGGGAAAGATCTCCTGTCGAGTGCTACGAACAGAAATGCTGGAATGCCTTGGAGACACTGACTTTCTGGCAAAGCTGCACTGTATACGGCAGGCGTGTCAGGTCATCTTATGTGAAAGAGCAACTAGAGCATTTCTGGCTGACACTGGAAAGAGAATATTGTCTTCAATAATTGTTAAATCGAGGAAGAGCCCAAATAGATTTGAGGAGGTGTTTGAAGAAATGATCTGCTTCATGGAGCAAACAGACCACTGGGAAAACACAGAAATGGAGCTTTCTGCAAGAGGGGTTAAGCATCTGAATTTCTATGACATTGTTCTTGACTTTATCCTTATGGATTCATTTGAGGATCTTGAGAATCCACCAGTCTCAATCCAAAATGTGGTTAACAATCGTTGGCTCAACAACTCCTTCAAAGAGACAGCTGTTGCATCAAGTTGTTGGTCCGTACTGAAGCAGAAGAGACAACATATGAAGGTTCAAGATGGCTTCATTGCACATTTCTATGCAGTGTGTGAACACATAAGTCCCGTCTTGGCCTGGGGGTTTCTAGGTCCAAAAAATTCCCTGCACGATTTCTGCTGCTTCTTCAAGGAGCAGGTGCTGTTCTTTCTGAAGGACATCTTTGACCTGGATAAAGTGCGTTACTCTAGTCTAGACACACTGTCTGAAGATATCCTGCACCTGCTTCACCGACGCTCTGAGCTGCTTCTGGCCTACCTGGGCACCGACATGATCCGTCACCTAAATGGCTGTAGCGACACACCTTTGAACCTGGTACCCACTGCTTTGCTGGAGGCACAGGTTCAATTCCTCATGATATATTTTTACCTTATAATTGGAGCCCTTGAACAGTACGTTCTGCGGAGGGACAGACTCAAAGGATTCCTCCTTACGGACAAACTAGGACCTGATTCTACGAACTACGCCTGCAGCATCTTCAACACTGTGAGTGAGAATGAAGGCAGCAATGTGGGACAAACATTAGCACTACAGAGGGGCATCAAGAAAGCTTGCAAACCAATGAAACATGAGCATACACACAGTATACGTCAGTTATCAGTGAGTGCATTCATAGGACTAACTGGAGCATTTCGCATCTGCATGCATTGTAAAACAGTAGAACAGGACCACACTAAACAGACTTACCAGGAAGCTAACAAATTGGCAATCAAATTTTAATTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU26953 lncRNA upstream 131030 2290346 ~ 2291021 (+) True G23871
TU26864 lncRNA upstream 214416 2207105 ~ 2207635 (+) True G23789
TU26861 lncRNA upstream 221115 2200694 ~ 2200936 (+) True G23787
TU26830 lncRNA upstream 282183 2139545 ~ 2139868 (+) True G23771
TU26829 lncRNA upstream 282507 2139288 ~ 2139544 (+) True G23770
TU26976 lncRNA downstream 6741 2453578 ~ 2454181 (+) True G23893
TU26984 lncRNA downstream 8172 2455009 ~ 2456866 (+) True G23898
TU26999 lncRNA downstream 13997 2460834 ~ 2461099 (+) True G23913
TU27007 lncRNA downstream 32250 2479087 ~ 2479378 (+) True G23921
TU27011 lncRNA downstream 43886 2490723 ~ 2491060 (+) True G23925
CI01000003_02259112_02344710.mRNA mRNA upstream 77341 2259112 ~ 2344710 (+) True CI01000003_02259112_02344710
CI01000003_02175343_02190917.mRNA mRNA upstream 228731 2174790 ~ 2193320 (+) True CI01000003_02175343_02190917
CI01000003_02101903_02151773.mRNA mRNA upstream 270075 2100815 ~ 2151976 (+) True CI01000003_02101903_02151773
CI01000003_02070747_02072861.mRNA mRNA upstream 348662 2070747 ~ 2073389 (+) True CI01000003_02070747_02072861
CI01000003_01982406_01992219.mRNA mRNA upstream 429207 1982336 ~ 1992844 (+) True CI01000003_01982406_01992219
CI01000003_02466819_02469433.mRNA mRNA downstream 19982 2466819 ~ 2469631 (+) True CI01000003_02466819_02469433
CI01000003_02510102_02514782.mRNA mRNA downstream 63265 2510102 ~ 2514969 (+) True CI01000003_02510102_02514782
CI01000003_02534151_02541110.mRNA mRNA downstream 87314 2534151 ~ 2541444 (+) True CI01000003_02534151_02541110
CI01000003_02551541_02556812.mRNA mRNA downstream 104704 2551541 ~ 2556836 (+) True CI01000003_02551541_02556812
CI01000003_02781537_02783192.mRNA mRNA downstream 334596 2781433 ~ 2783270 (+) True CI01000003_02781537_02783192
TU26952 other upstream 136410 2280660 ~ 2285641 (+) True G23870
TU26311 other upstream 553914 1863892 ~ 1866921 (+) False G23315
TU26312 other upstream 553914 1864690 ~ 1866921 (+) True G23315
TU26310 other upstream 553914 1864608 ~ 1866921 (+) True G23315
TU25485 other upstream 1496803 924803 ~ 925248 (+) True G22578

Expression Profile

CI01000003_02422051_02446833.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

CI01000003_02422051_02446833.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_02422051_02446833.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031894 False 2471 mRNA 0.47 16 NC_007113.7 8663108 ~ 8688759 (-)
bowfin (Amia calva) AMCG00004972 True 1692 mRNA 0.55 14 CM030140.1 11343332 ~ 11361553 (-)