RNA id: TCONS_00013007


Basic Information

Item Value
RNA id TCONS_00013007
length 726
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_006754
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33320063 ~ 33321541 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTCCATCTTCTATTTTGTATTTTAGCCAAAAGCGCTGCATCTTTTATTGTCAGCGCACCAAATAATGCGGTGATTGCAGTCAGGGGTCGTCCAGCTGTTCTGGGTTGTTATTTCATGCCAGACCCTGATCTATCCAGTCTTTCTATTGTTTGGCAAAGAATGGAGGATTCAAGGCTGGTGCACGTTTTCTATGATGAAGAAAACCTGCAAGAACAACAAAGTGCAGAGTACCACAGCCGGACCTCACTGTATATTTCAGAGCTTAATAAAGGGAACGCCTCTCTCAGGATAGATGGAGTTGGACTAAAGGATGAGGGTTGGTACGTGTGTAAAGTGAGAAACAAGAAAGGAGCAGGAAAAGTCAAAATAAAACTGGACTATGGAGCCTTTTATTCAGAGCCCAGATTAAGCATCCATGCAAACTCCTCCTCAGTGAGGGTGCAGTATGAGACGGAGGGTTTCCCCAAACCTGAGGTGATCTGGCAGGACGAACACAACCAGAGCCTCAGTCATCACCTGGAGCTCCTTGACCACACAGAAGTTGGACTTTATTTAGTAAAGAGCAGCTATGAGGCCCAGACACCAGTAGTGAAAGTCACATTTATACTAAAGAACCACCTCCTGAACCAAAAGCTGCAGAAATCAGTGATCTATAGTAAAGACTTTCTCTCTATCTTTACATTTCTTCAGATTTTCATCATAGATTTTGATTTACGCTTGTGa

Function

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-327 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000112084

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013002 lncRNA downstream 18893 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00013864 lncRNA downstream 52463 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013001 lncRNA downstream 52478 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013863 lncRNA downstream 52479 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013003 lncRNA downstream 52528 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013865 lncRNA upstream 131380 33452438 ~ 33463644 (-) True XLOC_006757
TCONS_00013866 lncRNA upstream 136465 33457523 ~ 33459318 (-) True XLOC_006758
TCONS_00013013 lncRNA upstream 295953 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013014 lncRNA upstream 300212 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013018 lncRNA upstream 338650 33659708 ~ 33662432 (-) True XLOC_006761
TCONS_00013004 mRNA downstream 2665 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013006 mRNA downstream 2737 33314847 ~ 33317326 (-) True XLOC_006753
TCONS_00013005 mRNA downstream 2740 33314675 ~ 33317323 (-) False XLOC_006753
TCONS_00013000 mRNA downstream 63396 33251721 ~ 33256667 (-) True XLOC_006751
TCONS_00012999 mRNA downstream 73909 33229446 ~ 33246154 (-) True XLOC_006750
TCONS_00013009 mRNA upstream 21397 33342455 ~ 33362191 (-) True XLOC_006755
TCONS_00013010 mRNA upstream 73058 33394116 ~ 33398735 (-) True XLOC_006756
TCONS_00013012 mRNA upstream 290649 33611707 ~ 33639050 (-) False XLOC_006759
TCONS_00013015 mRNA upstream 324355 33645413 ~ 33654931 (-) True XLOC_006760
TCONS_00013016 mRNA upstream 337813 33658871 ~ 33662523 (-) False XLOC_006761
TCONS_00012961 other downstream 724843 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1625016 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1673057 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1740499 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1879123 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 290645 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 338650 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1317571 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1323092 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1861936 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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