RNA id: TU25282


Basic Information

Item Value
RNA id TU25282
length 5691
RNA type TUCP
GC content 0.43
exon number 2
gene id G22420
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 179531 ~ 189439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTTTCGGAGGATGCATTCCAAGGTAGGGCATCAAGGCACGTCCAAATCTAAAGTTAGCTTCACTTCCTGTCTCATGAGATACCTTCATCTGATCAATTTTTGAAGGCAGCATAGATGTATCCTTTGCTGCTTTTGATATCCCTTTGATATGCCTGTGCTTTCCATTCTGTGACAGTTGAGCTAAAAAAAATAACGACAGCATCTGAAAGCTGCGGTTGGTGGTCAGTTTTTGTGTAAATGTACGTTATTGACCATTGTTGTCCACTTTTGATGTCTTGAGATAAATTACTATTGTAGTAATTAAATATTCCCTTAGTTATCCTGTATTTTCATATATTTTCATATATATAGATCATTAAACCATCACGCTGCCTCAGAAGTCTGTCCAAAATCAGTTTTGTGAGGTGCCTTCATGCGCAAACGCTGCCTGCAAAGTCATTGCCTGATAGGGCAGCAAGGCAACAAGTCAGCTGCCTAAGTTTTCGGATGCAGCCATTATAAATTCAAAAATTGCCTCCTCAAAAAGCTTAACGACATGTTTTACAGCAGTGATATCAAATGCTCATTGGCTCTCACCTGCTTCGTCACAGATTGCAGCATGTCGTGTTTCGGTTGATGTGCGTTTGCATGAGAAATGTGCACCTTCACCGAAGTGGATTGGGATAATAATTTCAGTGATTGACAACTTAAATTATGCTCTGTACCTCATACAAAATTATTACATACCAACACAGAGGACTGCAACTGCAACACATCATTATTTGGACTATACTTTTGGTCCCACTTTTGACATTTTTGCAATAAATAAATTGTGATTCCACTTGTCTGTTATGTTTCTTTATAACTGTACATATTTTTAAGAAATGGCTATGGGTAGGTTTAGAGGTAGGAGTGGGATTAGCGGCTCAAAATATAATTTTAATGCTATATTGTTACTAAAATTGTACTACTGTCAAGACATAGATGGAGGCAGATGGGTAAGTTTACACAGATGTTTATTGGAACAGAGGCACGAACACAGGTGAAGGAAATTGCAAGTGAGTAGTTGAACAAGCACTTCAAAACAGTCACTTAGCTGACGGTAATGAGAGTCTATTTGCAGGTTTGAGAAGACGGTGTGGAGCTAACGACTGGAGACAGAAGACGATGGGAGGAAGACACCGGTAAGTAGTGGGTAGCAGTCCATGTAAGTCTGACGAGACCAGACACTGAGTGCAGGGAGTGAGTGGCTTAAGAGTGTTCCTGGTGATGAGGTGCACGTGTTGGTGATTAGAATTCAGGGGATTGTGAACATGTGGATGAGCATGAAGATCTGGGGTGCTTCTCAATTCTTATTTGTGCATCCTCGTTTCCTTTCCTCGCGTCTTAGCTCCACCCCTTCAGGATGCGAGGGAAGGACACAAGGAAAAGACGCGAGGATGGAGGAATTGAATCAAGTGAAATGATATCCTCGCTCCCTTTATTGTCACTTCAAAGCGTCATCAGCTGCACTCGAGGGATCTACCCATATGTTGTTAAAGTTTGGTTATTTAAAAAAAAAAAAAAAAAAAAATTGTAATAAATATTAATAAACCAAGATGTCCTGTTGAAATATGTGAGATATAAAGTTTATTTAAACTGCAAAAGTAAAGAATACATTTAAATTATTGTGACAGATATGAAGGGGGAGGAGAATTTATACGTGCATCAGGTTTCTCGATGAGAAAGACTTCCGCAAAGGATACACCTCACTCATGACACCTTAGGAAGCTTCCTCACTCCTCGTTCCTCACCTCCTCATGGTGCATTTAGAAAATTGAGATGTCTTTCAAGATGGATGAGCTTGATCGGTTTCCGGGTCATAGGATGGAGGACAGAGGAGCGAGGAAACAAGGAGGAATATTGAGAAGGACCCCTGGTGACGATGGTGCTGGTTGTGACTCCGTAACAGTACCCCTCCCCCCCCCCCCAGGGTTTACCTCGACCCCGGGTAGCAGGGCGGTCCGGATGTTAAGCGTGGAATTGAGTGAGAAGTGAGGAGTCGAGGATGTCATGACGGTTGACCCAGGAAGTCTATTTGGGGACCCCGTCGTCGAGAGTCGAGGATCGCCCGCACCTGGTAGATGGCTTCTTCCTCAGCGATGTTGGGAGGAGGTACCGCATCGTCACCAGGATCTGTGGATGGAGTTTGTGGGGTTTTAACAGGGATACATTAAATGAAGGTGAGATACGATACTGTGCTGGGAGTTTTAGCCGGTAAGTGACTTTGTTGAGCTGCCTCTGTATGTTGCCAACCGCTTGCTGAACACATCCTGGAACGCCCGGTATTCTGGAGGAATTTCCACTTTGAGGTCAGTTTCTGGACTTTCGATGGAGGTGGAGAGAACAGGAAGGATGTTGGAATCGGAAGAAGATGGTTTTAGATTCGAGGAGGATTTTCTAATAGGAGACAAACAGTTTAGGAAACATTCTTCACTCCATTTGAGGATCTCACCGGTGTTCCATTGAATGTGCGGCTGGTGTTGTGTAAGCCAGGGGCGTCCCAGGATGATGTCCGCAGTGGAACCTTCCAGCACCATGAATGTGATTTCCTCTGAATGTAAGCATCCGATGCGGAGCGTCAGTGTGGGGGAGAAATGTCGAACGTGACCACGGCCCAATGGCTTTCCTTGTATGGTGTGGATACGTAGATCCTGTTGGCAGCGTTTACGACGTACATTCAGTTTCTGGAGAATCTGGTTGCTAAAGAAATTCCCAGAGGAGCCAGAATCAATGAGGGCTTGCGCTGAAACGCAGACATGAGAGTTAATGACATGTACAGGCGTTCTCGTGAGAGGTGCAATGCGAGCGGGCAGGTGGATAGTACCCACTGCTGGGCGTGGTGGTCGGACGGGACAGGTCGCGATCACATGGTCCTCTCCCCCACAGTACAGACAGAGATGTTGTAGGATCCTTCTGCTCCTCACGGGTCAGGCAATTAGAATCAACCTGCATGGGTTCTGGTGCCGGAAGGGCAACAGCTGGTGTGGCGGGCAGAGGATTGGCAGTGGGTGTGTGTGGAGCACATATGCAGAAAAGCATTGGGCAACACGGATGTTTTTTTTAAGTAAATTCTCCAGGCCCATAGTGCCATCGTACACGACCATTAATTGTTTAACTTTGGGGCTCGAGCCTTGGCAAAAGGCAGTTATCAGAGCCGTTTCATTCCAGCCGCTGGCAGCCGCCAGAGTGCGGAAACGGAGGGCATACATACTCAGATTCATTGCTTTGTCGTAGATTAAAGAGTTGGTCGTGTACAGAGAGCTCAGCAGTGCATTGTCTGAATACCTCTCGGAAGTGGGCGAAGAAGGAGTTAATGGAGGATGTAACAGGAGCATTGGATTCCCAGAGGGGTTGAGCCCACTGTAATGCTCGTCCGGTGAGTAGTGAAATGACAAATGCCACCCTGGATTGTTCAGTGGCGAACAGCTGAGACTAGGCTTCCAGATAGAGGGAGCACTGTAGAATAAACCCACTGCAATCCTCCGCCGCGCTGGTGAATGTCGCTGGTCGGGCCATGGGACTGACAGAGGCAGCTGGAGATGAAGCAGCGGGTGTTGGGTGCTGGAGTGCGAGGCAAATGGCGTAGAGAAGATCAGCCGGGACTGTGGGTGCAGTGCTTGTGGCAGGTTGTGGGAGTGAGGATCGTACTGCGTCGACCAAAGTGGCGAACGGGTCCGCAGTACGATCCCCACCTGTGTCCGAGGTGCTCTGCATGAGGTCTGGTCTTCTGTCAGGACACAGACGGAGGCAGTTGACTAAGTTTACACAGATGTTTATTGGAACAGAGGCACAAACACAGGTAAAGGAGATTGCAGGTGCGTAGTTGAACAAGCACTTCAAAACAGTCACTTAGCTGATGGAAATGAGAGTCTATTTGCAGGTTTGAGAAGACGGCGTGGAGCTGACGACTGGAGACAGTAGACGATGGGAGGAAGACACTGGTAAGTAGCAGGTAGCAGTCCACGTAAGTCTGACAAGACCAGACACTGAGTGCAGGGAGTGAGTGGCTTAAGAGTGTTCCTGGTGATGAGGTGCAGGTGTCGGTGATTAGAATTCAGGGGATTGTGAACGAGTGGGAGGAACGTGAAGATCTGGTGACAATTGTGCTGGCTGTGACTCCGTGACAACTACACATTTCTGTCCATTACGTTTTATATTTTCTTTTTATATTCTCTATAAAATGGTTATGTTTAGGTTTTGGGTAGAGTTTAGGTATCTAAAATGTGTCTATAAAATTGTAAAAAAGCAATTATACAAATATCTTTATGATATAAAAGATTTGTAAATATTTTGTTTTTTAGATGAAAAACGTAATAATATTTATGTAATAATGTTCATATTGTACTTTTTACCATCTATCTATATTTGTCTATGTACAAAGAGTATGTTTTACCTGTAATTGTTGCATATTAATACCTATGGATTATCATAGTATCTTGCTGCTACTGCTTTACAGCAGAATTTGAACTTGTCTCAAATTTGATGAAGTTCATGTAATTCTGTACTTTCTTGTATATTATTGTGAAGCTGCTTTGAAACAATTTATATTGCATAAAGTGCTATAAAAATAAAGGTGACTTGACTTGTTTTCCCTTGTGCGTGTTGTTGTAACCCCTGTTTTGGATTTGTCCTGTGTTTCTGTTTTCCTCCGAGTTACTGGTTTCTGGTTTTATTTATATTTTGTGGTTTTGTTTCATTAGAGTTATCTGTTTCCTGGCTTTTTTTCTCTCTTTTCATTTATTAAAAACCTTTGCACTTCAAGCCACTATCCTCTGCTTGCCTTCCTTTATCCAGCCTGCCCGTTGTTACAAGTGAAGAGGGAAAGATTTAGATTTTGCTTGCTGAATTATTAACTGCAGTTTACTGATCTCTGTCTGTGGAACAGTGGCCGGTTGCATAAACCACTTAGACTAGTCTTAAAAGACACTATTTAAGACACTATTTTTTTTTAAATAACTATTAAGACACTATTTTTTGAAGAGTGGTCCTAATTTTTTAAAGTCCGTTACATAAAAAGGTAGATTGGTGTAATTGGAATTGGAAAAATAACATTGATTACCCCTTGGTTAACTGCAAGTTGGTCAAACTAGTTCTTAAGACACAGTCTTAATATAGTGACTAAGTTTATGCAACTGGCCCCTGGACTGACATATAAATGTAAGGATTAGAGGTGGAAAGGACATATCAGTTCAGCTGAGTTAAAGAACAGCTTGAGGCTATTCCAGTAACTCCCTTCAGCTGTCTTTCATCTCACTCCACACCTTATTTTCAATCTGCAAACAGGACAGTTTTACACATAGAATCACTTGTTCTCTGAAAGACTCCACTTTCCCTGAGATATAAAAAAAGACTTTGCACTCCCATTTCCCTGTTGGATTTCAATAGGGTAGATGGTGGATATGAATAGATAACAGTAATGTCCTCTTATCCACTAACTGTGTGTAAAGTCAGTGCATGAATATTTCATGCAGAAATCACAATTCATCATGGGTTCACTTTTCAGTTTTTCACTTTTACATGTCACTTTTACACACATTTATTGAATAATTGTGCTTTTGTTAATCTTTTCATTTGAACATAAATATTTAGTTAATTTTCTGCCAGTGTATGAAAGTGATCTGTGAATTAATTATGTTGGGTATTAAAAGTTTTGTGACAAACAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU25254 lncRNA upstream 19071 137893 ~ 160460 (+) True G22394
TU25256 lncRNA upstream 32826 145858 ~ 146705 (+) True G22396
TU25253 lncRNA upstream 37018 137893 ~ 142513 (+) False G22394
TU25183 lncRNA upstream 142913 33154 ~ 36618 (+) True G22339
TU25181 lncRNA upstream 151961 27263 ~ 27570 (+) True G22337
TU25294 lncRNA downstream 16930 206369 ~ 206686 (+) True G22432
TU25295 lncRNA downstream 17542 206981 ~ 207272 (+) True G22433
TU25296 lncRNA downstream 18144 207583 ~ 207922 (+) True G22434
TU25297 lncRNA downstream 22743 212182 ~ 213447 (+) True G22435
TU25298 lncRNA downstream 24830 214269 ~ 214693 (+) True G22436
CI01000003_00157111_00159800.mRNA mRNA upstream 19287 156863 ~ 160244 (+) True CI01000003_00157111_00159800
CI01000003_00011191_00013812.mRNA mRNA upstream 165633 11191 ~ 13898 (+) False CI01000003_00011191_00013812
CI01000003_00007611_00010967.mRNA mRNA upstream 168564 7611 ~ 10967 (+) True CI01000003_00007611_00010967
CI01000003_00266342_00275005.mRNA mRNA downstream 76903 266342 ~ 275312 (+) False CI01000003_00266342_00275005
CI01000003_00323130_00336023.mRNA mRNA downstream 133428 322867 ~ 336168 (+) True CI01000003_00323130_00336023
CI01000003_00355244_00360638.mRNA mRNA downstream 165805 355244 ~ 360793 (+) True CI01000003_00355244_00360638
CI01000003_00380494_00385991.mRNA mRNA downstream 191055 380494 ~ 386091 (+) True CI01000003_00380494_00385991
CI01000003_00390997_00406970.mRNA mRNA downstream 201458 390897 ~ 408312 (+) False CI01000003_00390997_00406970
TU25360 other downstream 201574 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25485 other downstream 735364 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1673829 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1673829 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 1675169 1864608 ~ 1866921 (+) True G23315

Expression Profile

TU25282 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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TU25282 Expression in each Bioproject

Bar chart with 43 bars.
TU25282 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00054896 True 5254 mRNA 0.41 2 NC_007115.7 72205923 ~ 72222067 (+)