Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU25409 |
| length | 202 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 2 |
| gene id | G22524 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 468673 ~ 468902 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU25373 | lncRNA | upstream | 17572 | 450548 ~ 451101 (+) | True | G22490 |
| TU25370 | lncRNA | upstream | 57061 | 410563 ~ 411612 (+) | False | G22488 |
| TU25369 | lncRNA | upstream | 57061 | 410760 ~ 411612 (+) | True | G22488 |
| TU25397 | lncRNA | upstream | 77761 | 390622 ~ 390912 (+) | False | CI01000003_00390997_00406970 |
| TU25391 | lncRNA | upstream | 95854 | 372551 ~ 372819 (+) | True | G22506 |
| TU25429 | lncRNA | downstream | 53247 | 522149 ~ 522653 (+) | True | G22544 |
| TU25438 | lncRNA | downstream | 92018 | 560920 ~ 561612 (+) | True | G22551 |
| TU25492 | lncRNA | downstream | 113166 | 582068 ~ 582405 (+) | True | G22585 |
| TU25490 | lncRNA | downstream | 275779 | 744681 ~ 744938 (+) | True | G22583 |
| TU25481 | lncRNA | downstream | 348896 | 817798 ~ 819540 (+) | True | G22574 |
| CI01000003_00431473_00447759.mRNA | mRNA | upstream | 20723 | 431473 ~ 447950 (+) | True | CI01000003_00431473_00447759 |
| CI01000003_00413809_00414819.mRNA | mRNA | upstream | 53517 | 412590 ~ 415156 (+) | True | CI01000003_00413809_00414819 |
| CI01000003_00390997_00406970.mRNA | mRNA | upstream | 60361 | 390897 ~ 408312 (+) | False | CI01000003_00390997_00406970 |
| CI01000003_00380494_00385991.mRNA | mRNA | upstream | 82582 | 380494 ~ 386091 (+) | True | CI01000003_00380494_00385991 |
| CI01000003_00355244_00360638.mRNA | mRNA | upstream | 107880 | 355244 ~ 360793 (+) | True | CI01000003_00355244_00360638 |
| CI01000003_00538178_00547944.mRNA | mRNA | downstream | 69183 | 538085 ~ 547983 (+) | True | CI01000003_00538178_00547944 |
| CI01000003_00568546_00573291.mRNA | mRNA | downstream | 99644 | 568546 ~ 573869 (+) | True | CI01000003_00568546_00573291 |
| CI01000003_00596144_00607951.mRNA | mRNA | downstream | 127242 | 596144 ~ 608038 (+) | True | CI01000003_00596144_00607951 |
| CI01000003_00644619_00663181.mRNA | mRNA | downstream | 174753 | 643655 ~ 663280 (+) | True | CI01000003_00644619_00663181 |
| CI01000003_00665762_00716862.mRNA | mRNA | downstream | 196059 | 664961 ~ 717379 (+) | True | CI01000003_00665762_00716862 |
| TU25360 | other | upstream | 73459 | 391013 ~ 395214 (+) | True | CI01000003_00390997_00406970 |
| TU25282 | other | upstream | 279234 | 179531 ~ 189439 (+) | True | G22420 |
| TU25485 | other | downstream | 455901 | 924803 ~ 925248 (+) | True | G22578 |
| TU26311 | other | downstream | 1394366 | 1863892 ~ 1866921 (+) | False | G23315 |
| TU26312 | other | downstream | 1394366 | 1864690 ~ 1866921 (+) | True | G23315 |
| TU26310 | other | downstream | 1395706 | 1864608 ~ 1866921 (+) | True | G23315 |
| TU26952 | other | downstream | 1811758 | 2280660 ~ 2285641 (+) | True | G23870 |
