Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU25508 |
| length | 238 |
| lncRNA type | inter_gene |
| GC content | 0.56 |
| exon number | 1 |
| gene id | G22601 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 879631 ~ 879868 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU25481 | lncRNA | upstream | 60091 | 817798 ~ 819540 (+) | True | G22574 |
| TU25490 | lncRNA | upstream | 134693 | 744681 ~ 744938 (+) | True | G22583 |
| TU25492 | lncRNA | upstream | 297226 | 582068 ~ 582405 (+) | True | G22585 |
| TU25438 | lncRNA | upstream | 318019 | 560920 ~ 561612 (+) | True | G22551 |
| TU25429 | lncRNA | upstream | 356978 | 522149 ~ 522653 (+) | True | G22544 |
| TU25509 | lncRNA | downstream | 85 | 879953 ~ 880262 (+) | True | G22602 |
| TU25510 | lncRNA | downstream | 753 | 880621 ~ 880871 (+) | True | G22603 |
| TU25512 | lncRNA | downstream | 2737 | 882605 ~ 882932 (+) | True | G22605 |
| TU25522 | lncRNA | downstream | 16253 | 896121 ~ 896329 (+) | True | G22615 |
| TU25532 | lncRNA | downstream | 33666 | 913534 ~ 913794 (+) | True | G22625 |
| CI01000003_00842413_00868623.mRNA | mRNA | upstream | 10968 | 842413 ~ 868663 (+) | True | CI01000003_00842413_00868623 |
| CI01000003_00747650_00802075.mRNA | mRNA | upstream | 76950 | 746547 ~ 802681 (+) | True | CI01000003_00747650_00802075 |
| CI01000003_00731635_00742538.mRNA | mRNA | upstream | 137022 | 731200 ~ 742609 (+) | True | CI01000003_00731635_00742538 |
| CI01000003_00665762_00716862.mRNA | mRNA | upstream | 162252 | 664961 ~ 717379 (+) | True | CI01000003_00665762_00716862 |
| CI01000003_00644619_00663181.mRNA | mRNA | upstream | 216351 | 643655 ~ 663280 (+) | True | CI01000003_00644619_00663181 |
| CI01000003_00981851_01059504.mRNA | mRNA | downstream | 101983 | 981851 ~ 1059504 (+) | True | CI01000003_00981851_01059504 |
| CI01000003_01126525_01129929.mRNA | mRNA | downstream | 246230 | 1126098 ~ 1130325 (+) | True | CI01000003_01126525_01129929 |
| CI01000003_01140472_01168860.mRNA | mRNA | downstream | 260474 | 1140342 ~ 1168900 (+) | True | CI01000003_01140472_01168860 |
| CI01000003_01258265_01259530.mRNA | mRNA | downstream | 378397 | 1258265 ~ 1259551 (+) | True | CI01000003_01258265_01259530 |
| CI01000003_01280201_01309764.mRNA | mRNA | downstream | 399899 | 1279767 ~ 1310125 (+) | True | CI01000003_01280201_01309764 |
| TU25360 | other | upstream | 484417 | 391013 ~ 395214 (+) | True | CI01000003_00390997_00406970 |
| TU25282 | other | upstream | 690192 | 179531 ~ 189439 (+) | True | G22420 |
| TU25485 | other | downstream | 44935 | 924803 ~ 925248 (+) | True | G22578 |
| TU26311 | other | downstream | 983400 | 1863892 ~ 1866921 (+) | False | G23315 |
| TU26312 | other | downstream | 983400 | 1864690 ~ 1866921 (+) | True | G23315 |
| TU26310 | other | downstream | 984740 | 1864608 ~ 1866921 (+) | True | G23315 |
| TU26952 | other | downstream | 1400792 | 2280660 ~ 2285641 (+) | True | G23870 |
