Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU26182 |
| length | 361 |
| lncRNA type | read_through |
| GC content | 0.36 |
| exon number | 3 |
| gene id | G23195 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 1614613 ~ 1684836 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26158 | lncRNA | upstream | 13431 | 1544521 ~ 1601182 (+) | True | G23180 |
| TU26247 | lncRNA | upstream | 61650 | 1552468 ~ 1552963 (+) | True | G23256 |
| TU26240 | lncRNA | upstream | 72177 | 1542129 ~ 1542436 (+) | True | G23251 |
| TU26234 | lncRNA | upstream | 106143 | 1508250 ~ 1508470 (+) | True | G23246 |
| TU26231 | lncRNA | upstream | 109632 | 1504549 ~ 1504981 (+) | True | G23244 |
| TU26286 | lncRNA | downstream | 35864 | 1720700 ~ 1720940 (+) | True | G23295 |
| TU26298 | lncRNA | downstream | 43144 | 1727980 ~ 1728184 (+) | True | G23304 |
| TU26295 | lncRNA | downstream | 105534 | 1790370 ~ 1790726 (+) | True | G23301 |
| TU26292 | lncRNA | downstream | 118728 | 1803564 ~ 1803914 (+) | False | CI01000003_01797491_01803265 |
| TU26289 | lncRNA | downstream | 119284 | 1806353 ~ 1807430 (+) | True | G23297 |
| CI01000003_01561017_01590804.mRNA | mRNA | upstream | 23690 | 1560913 ~ 1590923 (+) | True | CI01000003_01561017_01590804 |
| CI01000003_01489211_01493471.mRNA | mRNA | upstream | 120588 | 1487837 ~ 1494025 (+) | True | CI01000003_01489211_01493471 |
| CI01000003_01430247_01451033.mRNA | mRNA | upstream | 162987 | 1430247 ~ 1451626 (+) | True | CI01000003_01430247_01451033 |
| CI01000003_01382733_01410162.mRNA | mRNA | upstream | 204423 | 1382448 ~ 1410190 (+) | True | CI01000003_01382733_01410162 |
| CI01000003_01356590_01360272.mRNA | mRNA | upstream | 254265 | 1356477 ~ 1360348 (+) | True | CI01000003_01356590_01360272 |
| CI01000003_01728663_01761628.mRNA | mRNA | downstream | 43616 | 1728452 ~ 1762479 (+) | True | CI01000003_01728663_01761628 |
| CI01000003_01797491_01803265.mRNA | mRNA | downstream | 111785 | 1796621 ~ 1804384 (+) | False | CI01000003_01797491_01803265 |
| CI01000003_01863421_01867859.mRNA | mRNA | downstream | 178018 | 1862854 ~ 1867928 (+) | False | CI01000003_01863421_01867859 |
| CI01000003_01889537_01891879.mRNA | mRNA | downstream | 204662 | 1889498 ~ 1892071 (+) | True | CI01000003_01889537_01891879 |
| CI01000003_01893593_01901539.mRNA | mRNA | downstream | 208757 | 1893593 ~ 1901769 (+) | True | CI01000003_01893593_01901539 |
| TU25485 | other | upstream | 689365 | 924803 ~ 925248 (+) | True | G22578 |
| TU25360 | other | upstream | 1219399 | 391013 ~ 395214 (+) | True | CI01000003_00390997_00406970 |
| TU25282 | other | upstream | 1425174 | 179531 ~ 189439 (+) | True | G22420 |
| TU26311 | other | downstream | 178432 | 1863892 ~ 1866921 (+) | False | G23315 |
| TU26312 | other | downstream | 178432 | 1864690 ~ 1866921 (+) | True | G23315 |
| TU26310 | other | downstream | 179772 | 1864608 ~ 1866921 (+) | True | G23315 |
| TU26952 | other | downstream | 595824 | 2280660 ~ 2285641 (+) | True | G23870 |
