RNA id: TU26315


Basic Information

Item Value
RNA id TU26315
length 1593
lncRNA type antisense_over
GC content 0.50
exon number 8
gene id G23318
representative False

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1839845 ~ 1849069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAAGTCAGTTTACTGTCTACTCGCTGTGGTAAAAGTTCTAAGTTGGAAAGAGGAAGACACCTTAATGAACGACTGATAGGAGGGTTCTCCGGGCTGAGGGGAGTTGACCACCAGGTCCATGAGGGCTTGTCCAGGCGCAGGTGGGCACAAGCGCACTGACACCAGCTTGGTGAGCTGAGCTTTAACCTCTGGGTCCATGTTGATGACCTCCATGTATCCCCCTCGGAAACCACATTCTCCCATGTAACACTTAGAGGTGGAATGGAACGACGCCAGCTCTACTTTTCTTGAATACTCTGGACCCATCTCGAAAAGCACCTTCTTGAAGGAGTGAAACTCGCAGCCCTCTGCGTATACATTGTCCTGATACACTTCATCAGCCATTAGGAAGAGGTTTTCTTTGGCTGCAAATCGAATTACATCTTCAATACATTGTCTGCTTTGTACCTGACCAGTGGGGTTGCCGGGGTTGATGATGCACAGTACACGGGGGTTGCAATGCTCTCTAGCTGCCTGTAGAGAGCGCTGTAGCTCACTAATGTCTAGACTCCAGCACTTTTCCTCATTCAAGTAATAATTCACCTGAACAGCACCCAACTCTGCTATAGATGCAGAGTACAGAGGATACTGAGGAATAGAGATCATGACCCCCGTCCGTGTACGACCCTCTCCAGCTGTCAGCAACTTCAGTATGGTCACAATGCCGTCACTGGCTCCTGTTGTGAGGTAGATGTTATCAGGATCAGACGGAATACCGCCGTCACGGCGCTGTATGTAGTTTGCAACATCATGCCTTATACAGTCAATGCCCTGACTAGTTGTGTATGCACCGATGCTATTCCCTCCACATGCTTGCAAAATACGCCTCGCTCGGTTTTTGGCATCCTCTGGAAACTTGTTGTCATCAAGTAGTTGTGGATAAGTACACAGTGCCATCACCTGTCGAAAGAAGGTGATTGGCCGTTGCCCCATAGCGTGAGCATCCCCGATATTGGCTTTAATGACCTCTTTAAAAGGCTTCTTGACACCCTCTTTCAGTTCCTTCTCAATCTGCACTGCTCGCTGAACTATAGGTCCGCGGACCGCGTAGTCAACCTTCTTCACGTTGGCGTTCATGGTGTCAACGGTGAGCACTTTCCCCCGATGGGGTAACGCACCGTTTTCGGACATCTTCTGCTGTAGATGGTCGCTTTGGGCCGCCGGGAAAGCAGAAAGACCCCTATGGGGAGAAGAAAGAGAAGGCAGCGGGGGAAAGTTCAGGACCCAGTTTGGAACCTTGGGGTACACCGTCGCGTAAGCCTCACATCTTCCCAATTTCAAAACCCTCACGCTTCTATTAGAAAACATTTTTATAAACAATTAAAGCACAATTTTAGAGGTACAACTTAAATTTGGTTTCTTAAACTTTGGTTTTCCGCGCAGGTTTCGCTGTTATGCGCGTAGTAAAACCTTCAAATATCAACACGCGAAGAACTTTGGACTGAGTATCAGATAATACAAGATTTCATAAGAAGCACAACTGCTGGCCCCCACTAAATCCCCACGCCTCTTTTTATCTACGGGGCTCACAAACAGTATATTCAGTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU26324 lncRNA upstream 5042 1833479 ~ 1834803 (+) True G23325
TU26343 lncRNA upstream 8079 1831507 ~ 1831766 (+) True G23344
TU26342 lncRNA upstream 8401 1830478 ~ 1831444 (+) True G23343
TU26340 lncRNA upstream 12003 1827481 ~ 1827842 (+) True G23341
TU26338 lncRNA upstream 14049 1825569 ~ 1825796 (+) True G23339
TU26345 lncRNA downstream 2212 1851281 ~ 1851678 (+) True G23346
TU26325 lncRNA downstream 5236 1854305 ~ 1855168 (+) True G23326
TU26321 lncRNA downstream 6808 1855877 ~ 1857501 (+) True G23322
TU26322 lncRNA downstream 9419 1858488 ~ 1859214 (+) True G23323
TU26378 lncRNA downstream 104268 1953337 ~ 1953707 (+) True G23379
CI01000003_01797491_01803265.mRNA mRNA upstream 35461 1796621 ~ 1804384 (+) False CI01000003_01797491_01803265
CI01000003_01728663_01761628.mRNA mRNA upstream 77366 1728452 ~ 1762479 (+) True CI01000003_01728663_01761628
CI01000003_01561017_01590804.mRNA mRNA upstream 248922 1560913 ~ 1590923 (+) True CI01000003_01561017_01590804
CI01000003_01489211_01493471.mRNA mRNA upstream 345820 1487837 ~ 1494025 (+) True CI01000003_01489211_01493471
CI01000003_01430247_01451033.mRNA mRNA upstream 388219 1430247 ~ 1451626 (+) True CI01000003_01430247_01451033
CI01000003_01863421_01867859.mRNA mRNA downstream 13785 1862854 ~ 1867928 (+) False CI01000003_01863421_01867859
CI01000003_01889537_01891879.mRNA mRNA downstream 40429 1889498 ~ 1892071 (+) True CI01000003_01889537_01891879
CI01000003_01893593_01901539.mRNA mRNA downstream 44524 1893593 ~ 1901769 (+) True CI01000003_01893593_01901539
CI01000003_01907347_01909263.mRNA mRNA downstream 58053 1907122 ~ 1909600 (+) True CI01000003_01907347_01909263
CI01000003_01921110_01928830.mRNA mRNA downstream 71768 1920837 ~ 1929621 (+) True CI01000003_01921110_01928830
TU25485 other upstream 914597 924803 ~ 925248 (+) True G22578
TU25360 other upstream 1444631 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 1650406 179531 ~ 189439 (+) True G22420
TU26311 other downstream 14199 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 14199 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 15539 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 431591 2280660 ~ 2285641 (+) True G23870

Expression Profile

TU26315 Expression in PRJCA010000

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TU26315 Expression in each Bioproject

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TU26315 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030443 False 5339 mRNA 0.43 12 NC_007113.7 3533117 ~ 3573000 (+)