RNA id: TCONS_00013018


Basic Information

Item Value
RNA id TCONS_00013018
length 572
lncRNA type read_through
GC content 0.42
exon number 4
gene id XLOC_006761
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33658871 ~ 33662523 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGAAACCTCGTAATGCGTCAGCTGACAACAGAGGATCTGAAGAACCTGGAAGTAGACCTTAAAAACTACTTCCCACAGTCGCTGCAGGCATATGGATCCATTGTGCTGCGGAACAGAACAGGGCAGAGAGCTGATCCTGTTATCGTGCTTGTTGACCAGTGGCCAGAGTTCAGAGTTTTACTCATTAAACCAGAATATCGTGAGAAAGGAGATTCTTTCAAAGACATGACTGTTTTCTCCAAAAACGATGATTACCTTAGAGACCTGCTGGCACAGAGAGATGTCATTGACTGGAAGaagttcatttgtttgggtactTGCATATGCCTTGTCTGATTTCAAATCAGTATGAACCACTGAACATCTTTAAACACCTTTTTAACTTTAAACTTTGTTTCAAGCTGCTGAGCTTAAGCATGAGAAAATTATGGAAGTTGTGGCAGAAAACAGAGGTGTACCTGTGAAGAAAGAGGCAGTGTGCCACATGTTGGTCCTACAAGATCTATCAAAACTTCCAGCGTTTGATAGTTTATCACTGAAGATTTCCTCCCTCAATGAGTCTCATCTTG

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013014 lncRNA downstream 37035 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013013 lncRNA downstream 39786 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013865 lncRNA downstream 196064 33452438 ~ 33463644 (-) True XLOC_006757
TCONS_00013866 lncRNA downstream 200390 33457523 ~ 33459318 (-) True XLOC_006758
TCONS_00013002 lncRNA downstream 358538 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00013024 lncRNA upstream 20164 33682596 ~ 33683869 (-) True XLOC_006764
TCONS_00013867 lncRNA upstream 1542865 35205297 ~ 35289099 (-) False XLOC_006774
TCONS_00013868 lncRNA upstream 1542865 35205297 ~ 35289375 (-) False XLOC_006774
TCONS_00013869 lncRNA upstream 1542865 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013870 lncRNA upstream 1586265 35248697 ~ 35289110 (-) False XLOC_006774
TCONS_00013015 mRNA downstream 4777 33645413 ~ 33654931 (-) True XLOC_006760
TCONS_00013012 mRNA downstream 20658 33611707 ~ 33639050 (-) False XLOC_006759
TCONS_00013010 mRNA downstream 260973 33394116 ~ 33398735 (-) True XLOC_006756
TCONS_00013009 mRNA downstream 297517 33342455 ~ 33362191 (-) True XLOC_006755
TCONS_00013008 mRNA downstream 338167 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00013019 mRNA upstream 2873 33665305 ~ 33667922 (-) True XLOC_006762
TCONS_00013020 mRNA upstream 7504 33669936 ~ 33671694 (-) False XLOC_006763
TCONS_00013021 mRNA upstream 7510 33669942 ~ 33671694 (-) True XLOC_006763
TCONS_00013022 mRNA upstream 13124 33675556 ~ 33683889 (-) False XLOC_006764
TCONS_00013023 mRNA upstream 19443 33681875 ~ 33683913 (-) False XLOC_006764
TCONS_00013011 other downstream 20687 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00012961 other downstream 1064488 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1964661 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 2012702 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 2080144 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00013028 other upstream 976197 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 981718 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1520562 35182994 ~ 35194759 (-) True XLOC_006773
TCONS_00013037 other upstream 1544403 35206835 ~ 35221613 (-) False XLOC_006774
TCONS_00013038 other upstream 1708137 35370569 ~ 35370684 (-) True XLOC_006775

Expression Profile

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