Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU26952 |
| length | 4962 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G23870 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 2280660 ~ 2285641 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26864 | lncRNA | upstream | 73025 | 2207105 ~ 2207635 (+) | True | G23789 |
| TU26861 | lncRNA | upstream | 79724 | 2200694 ~ 2200936 (+) | True | G23787 |
| TU26830 | lncRNA | upstream | 140792 | 2139545 ~ 2139868 (+) | True | G23771 |
| TU26829 | lncRNA | upstream | 141116 | 2139288 ~ 2139544 (+) | True | G23770 |
| TU26355 | lncRNA | upstream | 232809 | 2029532 ~ 2047851 (+) | True | G23356 |
| TU26953 | lncRNA | downstream | 4705 | 2290346 ~ 2291021 (+) | True | G23871 |
| TU26976 | lncRNA | downstream | 167937 | 2453578 ~ 2454181 (+) | True | G23893 |
| TU26984 | lncRNA | downstream | 169368 | 2455009 ~ 2456866 (+) | True | G23898 |
| TU26999 | lncRNA | downstream | 175193 | 2460834 ~ 2461099 (+) | True | G23913 |
| TU27007 | lncRNA | downstream | 193446 | 2479087 ~ 2479378 (+) | True | G23921 |
| CI01000003_02175343_02190917.mRNA | mRNA | upstream | 87340 | 2174790 ~ 2193320 (+) | True | CI01000003_02175343_02190917 |
| CI01000003_02101903_02151773.mRNA | mRNA | upstream | 128684 | 2100815 ~ 2151976 (+) | True | CI01000003_02101903_02151773 |
| CI01000003_02070747_02072861.mRNA | mRNA | upstream | 207271 | 2070747 ~ 2073389 (+) | True | CI01000003_02070747_02072861 |
| CI01000003_01982406_01992219.mRNA | mRNA | upstream | 287816 | 1982336 ~ 1992844 (+) | True | CI01000003_01982406_01992219 |
| CI01000003_01969544_01973134.mRNA | mRNA | upstream | 307526 | 1969330 ~ 1973134 (+) | True | CI01000003_01969544_01973134 |
| CI01000003_02422051_02446833.mRNA | mRNA | downstream | 136410 | 2422051 ~ 2446837 (+) | True | CI01000003_02422051_02446833 |
| CI01000003_02466819_02469433.mRNA | mRNA | downstream | 181178 | 2466819 ~ 2469631 (+) | True | CI01000003_02466819_02469433 |
| CI01000003_02510102_02514782.mRNA | mRNA | downstream | 224461 | 2510102 ~ 2514969 (+) | True | CI01000003_02510102_02514782 |
| CI01000003_02534151_02541110.mRNA | mRNA | downstream | 248510 | 2534151 ~ 2541444 (+) | True | CI01000003_02534151_02541110 |
| CI01000003_02551541_02556812.mRNA | mRNA | downstream | 265900 | 2551541 ~ 2556836 (+) | True | CI01000003_02551541_02556812 |
| TU26311 | other | upstream | 412523 | 1863892 ~ 1866921 (+) | False | G23315 |
| TU26312 | other | upstream | 412523 | 1864690 ~ 1866921 (+) | True | G23315 |
| TU26310 | other | upstream | 412523 | 1864608 ~ 1866921 (+) | True | G23315 |
| TU25485 | other | upstream | 1355412 | 924803 ~ 925248 (+) | True | G22578 |
| TU25360 | other | upstream | 1885446 | 391013 ~ 395214 (+) | True | CI01000003_00390997_00406970 |
