RNA id: TCONS_00003016


Basic Information

Item Value
RNA id TCONS_00003016
length 705
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_000053
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3718666 ~ 3720603 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCACTCAACACCTGCCAGCGAATCAGAAGCGCGAGATTTCGCAGATATGGGTCGTTTGGTATTGCACGTCTGGGTTTTTAGTTTACACATTATGAAgggaaaagttttgtttttacatgATGTTTACACACTTCTTAATGTTGATAATGAAATATAGGCATAGATGGCTCGAAAATGTGCGACCTGTAAGCAACATTAACAGAAAAGTGAAGATAAAATAGAAGAGAAACTCAGACCACTAAAGACTTGCTTTCTAGCAGTTCAATGGCTCTGTCCTTTGAACCACTGCCGTATCACATCCTGAATCTCCAGGACGTCCCTTCACCCCCTGCAGCTGAAAGAGCACACGCTCATATGAGTCCGGTCCTAATCTAGTGACCGGCCCTAATGATTGATTGCATACTGAGAAGAGCCGTCACCTCTGCTGCGAAAAAGAGCGCAGGAAATGCTCATCAAGACCCCAACCGAGAAACTGAGAACAGCTTGATTGAGCTAGACTTGTTAACTCCGAATAGAACATTTCTGTGCGTAGACTGTGTAGGCTACTAATGCTACATGAAATGTACAACAGCAAAACAACTTATTGTGAATATAATAgggatatttttaatttaaaaaaagtatagtAGTTCCCATAAACATATGATGtatcttatttaaaaataaaaatattattgaaaaaaacaTAAAGTCACCTCAACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000101 lncRNA upstream 1419120 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00002808 lncRNA upstream 1695021 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 1713034 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 1818823 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 1926143 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000113 lncRNA downstream 877457 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 1180857 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 1590876 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA downstream 1590876 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00003019 lncRNA downstream 1986367 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00000110 mRNA upstream 682647 2712956 ~ 3036019 (+) True XLOC_000052
TCONS_00000106 mRNA upstream 1274456 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000109 mRNA upstream 1274894 2431956 ~ 2443772 (+) True XLOC_000050
TCONS_00000105 mRNA upstream 1309540 2301974 ~ 2409126 (+) False XLOC_000050
TCONS_00000103 mRNA upstream 1323693 2301961 ~ 2394973 (+) False XLOC_000050
TCONS_00000112 mRNA downstream 381138 4101741 ~ 4154332 (+) True XLOC_000055
TCONS_00000114 mRNA downstream 1552878 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA downstream 1555208 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000116 mRNA downstream 1681873 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000118 mRNA downstream 1701836 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000104 other upstream 1276983 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000108 other upstream 1315442 2403103 ~ 2403224 (+) True XLOC_000051
TCONS_00000102 other upstream 1416043 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000100 other upstream 1419120 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000098 other upstream 1429893 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000111 other downstream 39321 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000117 other downstream 1681931 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000120 other downstream 1716787 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other downstream 1718140 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000123 other downstream 1776682 5497285 ~ 5502084 (+) True XLOC_000062

Expression Profile

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