RNA id: CI01000004_01440447_01443088.mRNA



Basic Information


Item Value
RNA id CI01000004_01440447_01443088.mRNA
length 1669
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000004_01440447_01443088
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1439771 ~ 1443292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAATAGTTACATCGAGTTGTAGGGGGAATTCCACTGTCTGCCATTTCCAGACACTGAAAGTCTCACGCCACTTAGCATCACGTGATTTTTTTTTTTTTTTTTTTTTTTTTTGGACACACCCCTGCAAACGAAATTTATTCAAATGTGACACATTAAATAGCCATTTCAAACTATTATTTATACTGATATTCATGTCTTTGGCGATGGCAAATATTCCACCAGCGGCACCAAATGATCGAATAACTGCAGAAAAATCCGCGCGCAGCCCGAAATGTGCCAGATGTCGGAACCATGGCTTCGTCGTCCAGTTAAAAGGCCATTCGGGAAAATGTCAGTTTAGGCAATGCTTGTGCTGGAAGTGTTCTCTCATCAACGAGAGGACGAAAATCCTGGCATCTCAAAGACGGATCAAATCCGTTCAGGGAAACGAGTCACCGAGTACCGATCGTACCGAGCAGACTGCTCTATCTGACAGAAAAACGGTCTCTACGGGTAATAATTCTTCCACTAACGGAGCAAACGGCGAAACCGACGTCAACGCAAGAAAGGAGAATGCTATTAAAGCGCCCCTTAGTCGAGATGTCACAGGCGATAAAACGTACATTGACCTCCGCGCACCTGAAGGCACGCGCGGTTCCGTTAGCTTGGGCGCGGTTTTTTGTGATCAGAAGACACCGGCGGGACCAAGCGCTCCGAGCGGCGTTCATGGAGACTCACCACCTTTTCCTGGAGAGTACATAATTACAGAGGCAATCCCAGGGCAAATCTATCCTGCAGAGATGTTCGCAATCCCTCTTCCCTTGCATCCGCATTACCCGGACAGATACATGTTCCCGGCGGTGCTGGTGAGCCTGAGACCACCTGCACCAGGAGCCTTCAGGGAACAAGTTGGATTTGTTCCCTTGCCACCAGGAGCGCTGTCTCATCCACTGGAGACTCGGGAATGGCAAGTATGTTCCACAGGCATGGTTGTTCTGCAGTGGCACTCATAAAAATGCCTACAAACTATTATGTTAGTAGGACAGAGGCAACATTGTCTTTTGATACATACACTACCATTCAAAAGTTTAGGGTTAGGAAGATTTTTTAAAGAAATTAATACTTTTATTCCTCAAGGACGCATTAAAATGATCAAAAGTGACAGTAAAGACATTAATAATGTTACAAAAGATTTCTATTTAAAATAAATGCTGTTCTTTTGAACATTCTATTCGTCAAACAATCCTGAAAAATAGCATCATTGCAAAAAAATTACCAGCACAACTGTTTTCAACATTGATAACAAGACATGTTTCTTAAGCATCAAATAATCATATTAGAAAGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATAATACTGAAAGTTCAGCTTTGATCACAGGAATAAATTACATTTTAAATATATTCAAATTTAAATATTTTACAATATTACTGTTTTGACTGTATTTGTGATCAAATAAAACAGCATTGGTGAGACTTCTTTCAAAAACATTACCGACCACAAACCTTTGAATGGCAGTGTGATTATTCATTTGCTCTTTTTCATTGTTACACTTAAAAACTTTTTAATCTTTTCACCCAAACTTCTGATCAAGGGACTTCACATTGTCACAATAATTCTTTGGGCTGCTCTCACTTTTAAGAAAAACGAGGAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28780 lncRNA downstream 4434 1431847 ~ 1435337 (-) False G25511
TU28782 lncRNA downstream 4434 1431847 ~ 1435337 (-) False G25511
TU28781 lncRNA downstream 4434 1432638 ~ 1435337 (-) True G25511
TU28779 lncRNA downstream 6787 1431847 ~ 1432984 (-) False G25511
TU28786 lncRNA downstream 11894 1426692 ~ 1427877 (-) True G25515
TU28858 lncRNA upstream 5843 1449135 ~ 1449927 (-) True G25572
TU28847 lncRNA upstream 104459 1547751 ~ 1552872 (-) True G25561
TU28887 lncRNA upstream 131587 1574879 ~ 1575219 (-) True G25601
TU28888 lncRNA upstream 131976 1575268 ~ 1575565 (-) True G25602
TU28889 lncRNA upstream 132974 1576266 ~ 1576550 (-) True G25603
CI01000004_01404265_01425424.mRNA mRNA downstream 14347 1404265 ~ 1425424 (-) True CI01000004_01404265_01425424
CI01000004_01394018_01397517.mRNA mRNA downstream 42254 1393969 ~ 1397517 (-) True CI01000004_01394018_01397517
CI01000004_01352499_01377500.mRNA mRNA downstream 62256 1352073 ~ 1377515 (-) True CI01000004_01352499_01377500
CI01000004_01311508_01319203.mRNA mRNA downstream 120568 1311055 ~ 1319203 (-) True CI01000004_01311508_01319203
CI01000004_01280983_01292761.mRNA mRNA downstream 147010 1280585 ~ 1292761 (-) True CI01000004_01280983_01292761
CI01000004_01554696_01564701.mRNA mRNA upstream 111364 1554656 ~ 1564701 (-) True CI01000004_01554696_01564701
CI01000004_01605140_01622364.mRNA mRNA upstream 161260 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01626984_01627238.mRNA mRNA upstream 182924 1626216 ~ 1627238 (-) True CI01000004_01626984_01627238
CI01000004_01758554_01762415.mRNA mRNA upstream 315130 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01773383_01774888.mRNA mRNA upstream 329636 1772928 ~ 1774942 (-) False CI01000004_01773383_01774888
TU29027 other upstream 329748 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1831141 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3734935 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3736701 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 4177091 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile