RNA id: CI01000004_01554696_01564701.mRNA


Basic Information

Item Value
RNA id CI01000004_01554696_01564701.mRNA
length 2782
RNA type mRNA
GC content 0.46
exon number 10
gene id CI01000004_01554696_01564701
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1554656 ~ 1564701 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTCTATCGATAAAGTAGACCGGTGGGACAGATGGAAGTGCTTGATTCTGTTTGATTCAACACATCAGAGTAACAGAAATGTATCTTGGTCCTCAGGTGCGAATGGCATTTCTCCAAAAGAGAATGGGAGCCAAAGAAGACCACCCTCCTATTCTGTGGAGACACCCTATGGATTCCATCTGGACCTGGACTTCCTCAAATATGTGGATGACATTGAGAAGGGCAACACCATTAGGAGGGTGCCAATGCAGCGAAGGCAAAGAGGGCGAAATAACGGTGCCCTGTCACGTAACTTAAGCCTTCCGGGTTATGGGTGCAGAGCTACAGAGTGGAGCTCCATCAGTACTTTATGGCCCAAAACCAAACTAGGAGACTCTCAACAACATTTTGAGTTTCGATCTAGTGACAGTGTGTCTGCTGGATATGTCAGGAGGGGAGAACCAATCTACAAGTCCTTCACATCTGCAGAGATGGATGCTAATATTCAGGCTTTTGATGAGCAGCCTTTAGGACATTATGTCAGGCCAAATCTTTTGAGAGCCTCCAGTTTACCCTTGACTGTTTTACTAAGAAAACACTCTGAGTCAACCGATGATCCAACCAGCCCCAGCAGCCCCAAGGAATATCTAATGCAGGAAAATGGTTCCTCTGAGGATGTATTCCATGCATCCAACAGCAGGATAGGTAGGACAAACGGGACCCTCCAGCGGCTCACTGCAGCACTTGAACGAGTTGGGGAATTGGAAGAGGAGATCAGGGTCATTCCTGAGCTCAAGGCTCAGATATGTATTTTGCAGGAGGAGCAAAATAGGCTTTTACTCCAGTTACATACCCAAAACAAAACCACTGGGCCGCTGAATGTTCCTACTGAAAATCAAGACAAAGCAAGCGATGACTGGATGAATCGAGAATATGACCGGCTTGAGGAAAATGTCAAGGCTTCTTCTGAACAAGTTGAAGCAGTTGCAATGCCTTCAACTAGAATTCTTCCAGAGATAGAAAGACGTAAGATGGTCTCACGAGAAAAAGATCTCTTGGGTAATGGAGACAAAACCAAGTCTCTCACTGAAACTCTCCAGAGGAAAGTTGTTTTGTTGGAACAGAAACTTCATGAACTGCAGGTAGAACTGGATAAGACAAGAACTCTGTTGAAGCAGCAAGTAGAGGAGAGTCATCTCAAGGATGAGAAGATCAAGCAGTTGACTATGCAGCCTGTAATAGGGCACACACTGGCCAGGGCAATTTCACCTGAAAGCTCCTTAGTAAGTACACAAAATCTTGAACCTGTAGTAGAATTGCAGGAACCACTAATAAGTGAGCAAGAGATGCCAACAGACGAGGGAATCGCCCCTCAAGGTCTGGATAAAACTCCAGTATCACATGCAGACATGGAGCACCATGTGAAAAAATTGCAAGAGCTCCTTCAGGAGCAGTGGGAATGCCTTTGCAAAGGCGACTCATCAGGAAAAATGTCTTCCGATCACTTGCCTCAAAGGGTCTGCACCATTCAAAAGCAGTTAACAACTTTAGTCACCCTTCTAACCCTCTATGTGCTTCCTGCTGGTGATGTTTCTCAAACAGACTATAAAAGGCAGGGAATTCTTCCTGTAGTGGAAAAGAACCCAAAGACAGAACATTTGAAGGAGGTCAGCCCAAGAGACAGTGTGGAGACAGAGGGAGTAAGTAATGCTATCAAACTACAAGAGCATACAGAAGTGGATGCTGACCTCAAGAAGAATACGACAAAGGAAGAAGGCAAACTATGGACCACATGGACAATGGACTCCAGTGTACAGACAAGTAAAAGTAAAAACACAGAATTCAATCCAAAAGAAGATGTCAAAGATGTAGAGACCACAAAACAAGAAGATCTGCACAAGCAAATGAGTCAGGGAAGAGCTCTAGAGGATCAGACAGAGGAGGAGAGGAAGGATCACGTTTGTTTGAGAGTGGACTCGGATCAGAAATCCCTGGTAAACAGGGAAGCTGTTAATAAAGATTTCATAGAGGCATGTTGTTTCCTTAAAGACCATATGGATAAAGTGTCAGAACCTGATGATGAAACGAGTCAGGCTCTCACTGTTGTGTTCCAGCAATGGTTTCATGTCTCTGCTGAAGAGGGGGCATGTGCCGACATTGTTGATTTGTATCTCAGTGAGGTTAACTCACGAACACCTACAGTCCTTCAGTTCTTGGTCAACATGGTGGATGATAATGGGAACACCGCCCTGCATTATAGCGTGTCTCATTGTAACTTCAGCATCGTTAAGCTCCTATTAGACACAGGTGTATGTGAAGTGGACCTGAGAAACAAGTCTGGCTACACCGCTATCATGCTGGCCTCCTTGACAGCTGTAGAATCACCAGGGGACATGAAAGTGGTCCAGCAGCTGATGGAGCTTGGTGATGTCAACGCCTGTGTTGGCCAGGTGGGACAAACAGCCCTTCACTTGGCAGTAAGACATGGACGTGTCCCAATTGTGCATCTCCTGCTAGAACAGGGAGCGGATCCTAATGCCCAGGATCATGCAGGAACCACTCCACTGATCAGCGCCTGTGATCGGGGACACGTCAACATTGTGCGAATTTTGTTGGAGAAAGCAAACTGCAATGTCAATTTAAAAGACAAGGCTGGTCGCAGTGCATTATCTCTGGCAACACAAGCCTCTCATACAGAGATAGCGGACCTTCTGAAAGCCCGCGCAGAAACCAAGAGCTCAGACAAATGTAAGGTGTCTTAGAATGGAGCGTGGATATAGCAGTCATTTATACTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28847 lncRNA downstream 1784 1547751 ~ 1552872 (-) True G25561
TU28858 lncRNA downstream 104729 1449135 ~ 1449927 (-) True G25572
TU28780 lncRNA downstream 119319 1431847 ~ 1435337 (-) False G25511
TU28782 lncRNA downstream 119319 1431847 ~ 1435337 (-) False G25511
TU28781 lncRNA downstream 119319 1432638 ~ 1435337 (-) True G25511
TU28887 lncRNA upstream 10178 1574879 ~ 1575219 (-) True G25601
TU28888 lncRNA upstream 10567 1575268 ~ 1575565 (-) True G25602
TU28889 lncRNA upstream 11565 1576266 ~ 1576550 (-) True G25603
TU28894 lncRNA upstream 20570 1585271 ~ 1585549 (-) True G25606
TU28897 lncRNA upstream 22854 1587555 ~ 1588215 (-) True G25609
CI01000004_01440447_01443088.mRNA mRNA downstream 111364 1439771 ~ 1443292 (-) True CI01000004_01440447_01443088
CI01000004_01404265_01425424.mRNA mRNA downstream 129232 1404265 ~ 1425424 (-) True CI01000004_01404265_01425424
CI01000004_01394018_01397517.mRNA mRNA downstream 157139 1393969 ~ 1397517 (-) True CI01000004_01394018_01397517
CI01000004_01352499_01377500.mRNA mRNA downstream 177141 1352073 ~ 1377515 (-) True CI01000004_01352499_01377500
CI01000004_01311508_01319203.mRNA mRNA downstream 235453 1311055 ~ 1319203 (-) True CI01000004_01311508_01319203
CI01000004_01605140_01622364.mRNA mRNA upstream 39851 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01626984_01627238.mRNA mRNA upstream 61515 1626216 ~ 1627238 (-) True CI01000004_01626984_01627238
CI01000004_01758554_01762415.mRNA mRNA upstream 193721 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01773383_01774888.mRNA mRNA upstream 208227 1772928 ~ 1774942 (-) False CI01000004_01773383_01774888
CI01000004_01814534_01821755.mRNA mRNA upstream 249081 1813782 ~ 1821755 (-) True CI01000004_01814534_01821755
TU29027 other upstream 208339 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1709732 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3613526 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3615292 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 4055682 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile