RNA id: CI01000004_01626984_01627238.mRNA



Basic Information


Item Value
RNA id CI01000004_01626984_01627238.mRNA
length 1023
RNA type mRNA
GC content 0.48
exon number 1
gene id CI01000004_01626984_01627238
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1626216 ~ 1627238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCTGCTCACTATGCTTGTGAACTGCCCAATAAGCTAAGCTTTAGCCAAAGCATTACCATACAGCGCACCCATGACCAAGAACTAGATAGCCTGAGGTTACGTCCGCAGTTCAATCTCTGCCGAGACTCGAACTCAGGTCGCCATGTGCATGACTGTCAGTATGCAGCCCAAAAGGCTACTACTCCGACTGCTACCCGGATCCTCAGCCATCAGTTCAAAGGGGCAACCTACTCCAAAGAAGCACAAAATTAAGCATCCTGTCCATAGGAACAGGGGAGGCCTCAGGAGAGAACTGTGTTCTCTCAACTGTATGCTCTACATAAGAACGAAGCAATGTTCTTCACACCAAAGAACTTCACTACTGAACCCCTAGGGAAGGGCTCTACCTAGTATTGGGTGTCCTAGGGAGATAGTGAACATCAAATCGCCTGACTAAAATCTCCAGTGTGAATTGGAGGGGCTGCTGAGAGAGCGGAGTGCCGTGGAGCTCTTGTACACCCCCTACCAAGTAGCTGTTATCAGCTGATGGTTGCCTATTCCTACAGTTCTTGCGAATAACAAAGAGTGGGTTGCTAACTGTGATTAAGTCCACGTTTATGCTCTGTCTCAGTACTCCTCATGAACCATTAGGAAACATGCTAACATAGTCCTCCAACTATGTCCACACCAGCACCTCCAGGTATAAACTGGGGGCAACAAATGACGGAGTGAGACACAGAAGTGGAATGCTCATTCTCCTTGCTGCCCATCCACATAGGGAAACATATTGATGCAGCCTCCATAACCAGGAGGGGGCATCAGATGGAAGTGCCAAAATGCCATTTCCAATATGAATGTAATTAAAAGAGAAGCAGATTGATACTTCTCCATCAAATATGGCGACAGATAAGAAACTGGGATGCTACTGCAGTACTGCCCACTCTTCCTGTCCCGTCTAGCCCATTCGTGATGTAATCACAGAGGGAGCATATAGCTAACACCTCTGCACTTCCGAAACTGGAGGGGGGGAAGGGTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU28855 lncRNA downstream 22925 1602784 ~ 1603291 (-) True G25569
TU28903 lncRNA downstream 30203 1592380 ~ 1596013 (-) True G25615
TU28901 lncRNA downstream 35361 1590620 ~ 1590855 (-) True G25613
TU28900 lncRNA downstream 35982 1589770 ~ 1590234 (-) True G25612
TU28899 lncRNA downstream 36452 1589536 ~ 1589764 (-) True G25611
TU28844 lncRNA upstream 2108 1629346 ~ 1669982 (-) True G25559
TU28914 lncRNA upstream 22750 1649988 ~ 1664053 (-) True G25625
TU28990 lncRNA upstream 54733 1681971 ~ 1682530 (-) True G25688
TU29000 lncRNA upstream 56135 1683373 ~ 1684639 (-) False G25689
TU28996 lncRNA upstream 56586 1683824 ~ 1684639 (-) True G25689
CI01000004_01605140_01622364.mRNA mRNA downstream 3852 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01554696_01564701.mRNA mRNA downstream 61515 1554656 ~ 1564701 (-) True CI01000004_01554696_01564701
CI01000004_01440447_01443088.mRNA mRNA downstream 182924 1439771 ~ 1443292 (-) True CI01000004_01440447_01443088
CI01000004_01404265_01425424.mRNA mRNA downstream 200792 1404265 ~ 1425424 (-) True CI01000004_01404265_01425424
CI01000004_01394018_01397517.mRNA mRNA downstream 228699 1393969 ~ 1397517 (-) True CI01000004_01394018_01397517
CI01000004_01758554_01762415.mRNA mRNA upstream 131184 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01773383_01774888.mRNA mRNA upstream 145690 1772928 ~ 1774942 (-) False CI01000004_01773383_01774888
CI01000004_01814534_01821755.mRNA mRNA upstream 186544 1813782 ~ 1821755 (-) True CI01000004_01814534_01821755
CI01000004_01833090_01839923.mRNA mRNA upstream 205776 1833014 ~ 1839923 (-) True CI01000004_01833090_01839923
CI01000004_01853673_01854481.mRNA mRNA upstream 225950 1853188 ~ 1855232 (-) True CI01000004_01853673_01854481
TU29027 other upstream 145802 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1647195 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3550989 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3552755 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3993145 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile


CI01000004_01626984_01627238.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

CI01000004_01626984_01627238.mRNA Expression in each Bioproject

Bar chart with 42 bars.
CI01000004_01626984_01627238.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.