RNA id: TU29027


Basic Information

Item Value
RNA id TU29027
length 693
RNA type TUCP
GC content 0.39
exon number 2
gene id CI01000004_01773383_01774888
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1772928 ~ 1774942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGACATCCATAACTTCAGCGGAAGACACAGCTTTCACATATATTTCCAGCTATGAAGGTCGTGCTACTGGCAGTGCTGTTGGTGTTTTCTGTGTGGGCAGATTCGGCCCAGGCCCAGAAAGCTCTGAGACTCTGTGGCCGTGAGTTTTTTCGGGCTGTCGTCTATACGTGTGGGGGTTCCAGATGGAGGCGGGTCCAATCTGAAGACCCAGTAAATGGTTATGATATCGAGACTGATGTGGAGACCTCTGCAGAAATGGATCGAGTAAGAAGAGACGCACACGAAACGCTGCCCTCCACGTGCTGTAAAGTGGGCTGTAGAAAAAGTGATCTTGTCCGCATGTGCTGAGAAACACTCTAAACTTCATCATCCTCTCTGTGCAAAATGCCTTTAAACTATTATTTTTCTGAGGACTTGAATTACATAAAAAAAACCTCTCAAACTCTCAACATTTCAGAAACAGTTCAGATGTTTTTTTCAAGAAACTCTTCAAATGCAAAAAAGGATTTTGAAGTATTAGTATGATATTAGATTGCACTGAAAATAGGCCTACATTTGGTATTGTGCGAGTACATTCATATAGCTAGTACATGCCCAAAAACGTTAATATGATGTTTTTGTAGGTGTTTTCAATGGTTATGACACTGTTTTTAAAAATGTTGTTAAAAAAGTTTAAAATCTAGAAACAAGG

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TU28961 lncRNA downstream 15719 1755538 ~ 1757321 (-) True G25661
TU29025 lncRNA downstream 19580 1753239 ~ 1753460 (-) True G25712
TU29011 lncRNA downstream 42417 1728532 ~ 1730623 (-) True G25700
TU29001 lncRNA downstream 80979 1691294 ~ 1692061 (-) True G25690
TU28972 lncRNA downstream 82203 1689359 ~ 1690837 (-) True G25672
TU28966 lncRNA upstream 130372 1905313 ~ 1907541 (-) True G25666
TU29061 lncRNA upstream 135349 1910290 ~ 1910523 (-) True G25744
TU28939 lncRNA upstream 162258 1937199 ~ 1944111 (-) True G25642
TU28935 lncRNA upstream 241316 2016257 ~ 2018609 (-) False G25640
TU28936 lncRNA upstream 241316 2016257 ~ 2018609 (-) True G25640
CI01000004_01758554_01762415.mRNA mRNA downstream 10625 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01626984_01627238.mRNA mRNA downstream 145802 1626216 ~ 1627238 (-) True CI01000004_01626984_01627238
CI01000004_01605140_01622364.mRNA mRNA downstream 150676 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01554696_01564701.mRNA mRNA downstream 208339 1554656 ~ 1564701 (-) True CI01000004_01554696_01564701
CI01000004_01440447_01443088.mRNA mRNA downstream 329748 1439771 ~ 1443292 (-) True CI01000004_01440447_01443088
CI01000004_01814534_01821755.mRNA mRNA upstream 38841 1813782 ~ 1821755 (-) True CI01000004_01814534_01821755
CI01000004_01833090_01839923.mRNA mRNA upstream 58073 1833014 ~ 1839923 (-) True CI01000004_01833090_01839923
CI01000004_01853673_01854481.mRNA mRNA upstream 78247 1853188 ~ 1855232 (-) True CI01000004_01853673_01854481
CI01000004_01859136_01861721.mRNA mRNA upstream 84190 1859131 ~ 1863688 (-) True CI01000004_01859136_01861721
CI01000004_01864053_01864374.mRNA mRNA upstream 88951 1863892 ~ 1864374 (-) True CI01000004_01864053_01864374
TU30225 other upstream 1499492 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3403286 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3405052 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3845442 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 4759886 6534827 ~ 6545572 (-) True G29204

Expression Profile

TU29027 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.15.
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TU29027 Expression in each Bioproject

Bar chart with 16 bars.
TU29027 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030584 True 374 mRNA 0.51 2 NC_007113.7 10127762 ~ 10129061 (+)
tiger barb (Puntius tetrazona) TU13279 False 840 lncRNA 0.32 2 NC_056700.1 2298796 ~ 2301016 (-)
mexican tetra (Astyanax mexicanus) TU13279 True 513 lncRNA 0.40 2 NC_035898.1 11837640 ~ 11842193 (+)