RNA id: CI01000004_01814534_01821755.mRNA


Basic Information

Item Value
RNA id CI01000004_01814534_01821755.mRNA
length 1389
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000004_01814534_01821755
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1813782 ~ 1821755 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGTCGGAGAAGCTCCCACGCGTTGTGCACAGGATTAGTGTGATGATGAAGCCGCAGGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGGACACAATGCGCGAGAATCGTGGAGAACTACAGCTACACTCACCTGTCTGCTGGAGACCTCCTGAGAGAGGAGCGCAGCCGCAAGGGCTCGGAGTTTGGTCAGCTCATTGACAACTACATCAAAGAGGGCAAGATAGTTCCTGTAGAAATCACCATCAACTTACTGAAAAAGGCAATGGAAGAAACTATGAAAGTTGATGAAAAGAAGTTTCGCTTTCTTATTGATGGTTTTCCACGTAACCAAGACAACCTACAGGGGTGGAACACTGTCATGGACGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCGGTAATGAGGTGTGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGACGCACTGATGACAACAGAGAAAGTCTAGAGAAGAGGATCCAGACGTACCTCCAGTCCACACGGCCCATTATAGAGCAGTACGAGAAGCAAGGGAAAGTGCGCACGATTGATGCCTCCCGGTCGGTGGATGAGGTGTTTGCAGATGTGAAGAACATTCTGGATAAAGAAGGCTAAACATGTCCAGTGCAAAAATCCAAATTCTTGAAAATTAAGGTGTCTGTTTATTGATGTCAGCAGTGCTATGCTTTCTTCATGTATCTATATAAATTTTTACTCATTCTCCAGTAAAATAGGGTTTTTTAGATATGAGAGGGTGTGTGCTTATATCTGTGTTTGTAAGTCTGAAAGGAAAACACTTAGTTGTTGGGCAAACAATACATATTTACTCAATATTACACTAAAGATGAACAATATTTCAGTAGAGAATCAAGCAAGCTCGAACAATAACGTTCAGGGCACTTCTATAGGAACACAATACGCATTTGCTCTTAACTTGAAGATCATCTTCCTTATGCTTAGAAACATCTACCCTTCAGTGTATAACACACAATATAGAAATAAGCCAAGAGTAGGTTGTAAATTGCTTCTGCACTTAACTATTTCATTCTACAAGCAAATGAGCGATTATTAGTGACCAATAGGAAGTAAGTATTTTAGTAGATTTCAAGACCTGTTTGTGTTATATTTGGTGACATTTTTATCATTGTTTTGTATAGTAATCCACAGCAGGTTCTGAGAACATATTGCTGGCTACTTAAGAATAGAGAACTCCGTTTTAGCTGTACATTTTTCTTTTATCATATTGTGGCTGCTGTATTCCAAACACATGCCATCTTTGCTCAGGCAGTAGATTTTAAGATGTGGGGAACGTGTGCTCATGTTTTTATTTGATTGTCTCAGCGCCTTTGGGGTCGTTCATGAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TU28961 lncRNA downstream 56461 1755538 ~ 1757321 (-) True G25661
TU29025 lncRNA downstream 60322 1753239 ~ 1753460 (-) True G25712
TU29011 lncRNA downstream 83159 1728532 ~ 1730623 (-) True G25700
TU29001 lncRNA downstream 121721 1691294 ~ 1692061 (-) True G25690
TU28972 lncRNA downstream 122945 1689359 ~ 1690837 (-) True G25672
TU28966 lncRNA upstream 83558 1905313 ~ 1907541 (-) True G25666
TU29061 lncRNA upstream 88535 1910290 ~ 1910523 (-) True G25744
TU28939 lncRNA upstream 115444 1937199 ~ 1944111 (-) True G25642
TU28935 lncRNA upstream 194502 2016257 ~ 2018609 (-) False G25640
TU28936 lncRNA upstream 194502 2016257 ~ 2018609 (-) True G25640
CI01000004_01773383_01774888.mRNA mRNA downstream 38840 1772928 ~ 1774942 (-) False CI01000004_01773383_01774888
CI01000004_01758554_01762415.mRNA mRNA downstream 51367 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01626984_01627238.mRNA mRNA downstream 186544 1626216 ~ 1627238 (-) True CI01000004_01626984_01627238
CI01000004_01605140_01622364.mRNA mRNA downstream 191418 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01554696_01564701.mRNA mRNA downstream 249081 1554656 ~ 1564701 (-) True CI01000004_01554696_01564701
CI01000004_01833090_01839923.mRNA mRNA upstream 11259 1833014 ~ 1839923 (-) True CI01000004_01833090_01839923
CI01000004_01853673_01854481.mRNA mRNA upstream 31433 1853188 ~ 1855232 (-) True CI01000004_01853673_01854481
CI01000004_01859136_01861721.mRNA mRNA upstream 37376 1859131 ~ 1863688 (-) True CI01000004_01859136_01861721
CI01000004_01864053_01864374.mRNA mRNA upstream 42137 1863892 ~ 1864374 (-) True CI01000004_01864053_01864374
CI01000004_01874467_01874928.mRNA mRNA upstream 52456 1874211 ~ 1875203 (-) True CI01000004_01874467_01874928
TU29027 other downstream 38841 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1452678 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3356472 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3358238 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3798628 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 4713072 6534827 ~ 6545572 (-) True G29204

Expression Profile

CI01000004_01814534_01821755.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

CI01000004_01814534_01821755.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_01814534_01821755.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030582 False 1596 mRNA 0.45 6 NC_007113.7 10063765 ~ 10076929 (+)
eurasian perch (Perca fluviatilis) TU187257 True 1569 lncRNA 0.49 2 NC_053124.1 35447970 ~ 35498601 (-)
mexican tetra (Astyanax mexicanus) TU187257 True 2102 lncRNA 0.46 6 NC_035912.1 2522526 ~ 2529626 (-)