Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU28540 |
| length | 239 |
| lncRNA type | sense_over |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G25305 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 1958653 ~ 1959840 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28559 | lncRNA | upstream | 1392 | 1956642 ~ 1957261 (+) | True | G25324 |
| TU28580 | lncRNA | upstream | 2161 | 1956142 ~ 1956492 (+) | True | G25345 |
| TU28579 | lncRNA | upstream | 3048 | 1955385 ~ 1955605 (+) | True | G25344 |
| TU28572 | lncRNA | upstream | 8520 | 1945926 ~ 1950133 (+) | True | G25337 |
| TU28484 | lncRNA | upstream | 187949 | 1770395 ~ 1770704 (+) | True | G25254 |
| TU28532 | lncRNA | downstream | 17671 | 1978730 ~ 2027792 (+) | True | G25297 |
| TU28565 | lncRNA | downstream | 112219 | 2073278 ~ 2073486 (+) | False | CI01000004_02068075_02072887 |
| TU28547 | lncRNA | downstream | 112663 | 2073722 ~ 2074081 (+) | True | CI01000004_02068075_02072887 |
| TU28567 | lncRNA | downstream | 113860 | 2074919 ~ 2081442 (+) | True | G25332 |
| TU28593 | lncRNA | downstream | 124700 | 2085759 ~ 2122591 (+) | True | G25358 |
| CI01000004_01937296_01943730.mRNA | mRNA | upstream | 14923 | 1937296 ~ 1943730 (+) | True | CI01000004_01937296_01943730 |
| CI01000004_01917089_01920203.mRNA | mRNA | upstream | 37948 | 1915626 ~ 1920705 (+) | True | CI01000004_01917089_01920203 |
| CI01000004_01883020_01908403.mRNA | mRNA | upstream | 50019 | 1883020 ~ 1908634 (+) | True | CI01000004_01883020_01908403 |
| CI01000004_01867166_01868986.mRNA | mRNA | upstream | 89667 | 1867166 ~ 1868986 (+) | False | CI01000004_01867166_01868986 |
| CI01000004_01855598_01856473.mRNA | mRNA | upstream | 102129 | 1855351 ~ 1856524 (+) | True | CI01000004_01855598_01856473 |
| CI01000004_01999847_02001406.mRNA | mRNA | downstream | 38788 | 1999847 ~ 2002779 (+) | True | CI01000004_01999847_02001406 |
| CI01000004_02004004_02012588.mRNA | mRNA | downstream | 41812 | 2002871 ~ 2013414 (+) | True | CI01000004_02004004_02012588 |
| CI01000004_02014703_02018248.mRNA | mRNA | downstream | 53541 | 2014600 ~ 2018466 (+) | True | CI01000004_02014703_02018248 |
| CI01000004_02033826_02057420.mRNA | mRNA | downstream | 71944 | 2033003 ~ 2057653 (+) | True | CI01000004_02033826_02057420 |
| CI01000004_02068075_02072887.mRNA | mRNA | downstream | 106899 | 2067958 ~ 2074061 (+) | False | CI01000004_02068075_02072887 |
| TU28515 | other | upstream | 85295 | 1864159 ~ 1873358 (+) | True | G25282 |
| TU28416 | other | upstream | 342183 | 1604542 ~ 1616470 (+) | True | G25187 |
| TU28341 | other | upstream | 610479 | 1347470 ~ 1348174 (+) | True | G25120 |
| TU28378 | other | upstream | 624664 | 1332465 ~ 1333989 (+) | False | CI01000004_01332533_01345585 |
| TU27514 | other | upstream | 1486807 | 467843 ~ 471846 (+) | True | CI01000004_00467911_00469949 |
| TU28564 | other | downstream | 121998 | 2083057 ~ 2085707 (+) | True | G25329 |
| TU29214 | other | downstream | 587016 | 2548075 ~ 2573049 (+) | True | G25882 |
| TU29329 | other | downstream | 775477 | 2736536 ~ 2736768 (+) | True | G25992 |
| TU29335 | other | downstream | 797397 | 2758456 ~ 2758938 (+) | True | CI01000004_02745885_02768971 |
| TU29632 | other | downstream | 1547958 | 3509017 ~ 3522393 (+) | True | G26245 |
