RNA id: CI01000004_02137991_02139934.mRNA


Basic Information

Item Value
RNA id CI01000004_02137991_02139934.mRNA
length 966
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000004_02137991_02139934
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2137366 ~ 2140890 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTCTAAAAATTACTACATCTTATGCTAATAGAAAAGCAGAAATACAGCGGTTACTCCTGCAAATAAAGCAGTGCTGCGCTTATAGACACTACTTCATTACGTTGAAAAGCTATTGTGTTGTCAGTAAGGTACGACATAGAATAGGTGCAACAAGAAGGGGCCAGTTTGGAAGGCCTAAATCAGGAAACACAGTTTATATGCTAGAACCATCCAGTTTACGTTACAACAGAGCAGAGCACGAGGAGATTCACTTCACTTGTGGAAGCCATATTGCTTGTTTTGGTGTACAAATCAGATCAAGCTTCACAACATCTACAGTATTTGAAATGCCTGCGTGAACACTCAATGTACTCTTGATACATTTATTCATCTTCAATACTAGAGTTCTGGGGTTGTGGACATCAAACCACTTGGATCGCTGACATCTGACTACGATTATTCAAACATGAGCTGCTTCATATGTAGGCTTTTGCTCTGGTTACACCTGATCCATTTGGATCTCCAGCTCCACCTGTTGGCAGAAAGGTGTAGTGACTCGAGCCAGCGAGCCATTAACCATCGCAATGGCTTATCATGACCCATCCTTCAGTTCAGTGAACTCTTAGAAGCCCCTGAGGTCACCTAAATGCATGCGTACAAGCAGACAAATATAATACACACACGCACACACACTTATAAGGTAAACATTTCCTTCAGAAACCCCCACACAGAGCAAAGAAGATAAGGCAGAGTGGCAGACTCAGGCTGTTTCATCCGAAAACACAGACGTCCTGTGTCCATACCTTACAACTATGAAATCTAAAAGCAGGAAGATACGGTGTTTGACTACGAACATCACAGACCAGTCAGAAGAACATAGGACAGCTTGTCACCTCATAAGGAAGCGAAGTTGGAGTTCTTGAGCTATACAGTTTTTTTTCGTGCCTGTACAGTGTACAGTAACATCTCATTAACATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28957 lncRNA downstream 14122 2115454 ~ 2123244 (-) True G25657
TU28976 lncRNA downstream 63340 2073733 ~ 2074026 (-) True G25676
TU28935 lncRNA downstream 118757 2016257 ~ 2018609 (-) False G25640
TU28936 lncRNA downstream 118757 2016257 ~ 2018609 (-) True G25640
TU28939 lncRNA downstream 193255 1937199 ~ 1944111 (-) True G25642
TU28960 lncRNA upstream 54473 2194407 ~ 2195234 (-) True G25660
TU28948 lncRNA upstream 98095 2238029 ~ 2240154 (-) True G25648
TU29192 lncRNA upstream 267150 2407084 ~ 2407355 (-) True G25862
TU29920 lncRNA upstream 276957 2416891 ~ 2418656 (-) True G26529
TU29929 lncRNA upstream 305671 2445605 ~ 2445812 (-) True G26538
CI01000004_02074726_02085013.mRNA mRNA downstream 52262 2074485 ~ 2085104 (-) True CI01000004_02074726_02085013
CI01000004_02066165_02067630.mRNA mRNA downstream 69468 2066165 ~ 2067898 (-) True CI01000004_02066165_02067630
CI01000004_02027672_02032165.mRNA mRNA downstream 105201 2027425 ~ 2032165 (-) True CI01000004_02027672_02032165
CI01000004_02019772_02021213.mRNA mRNA downstream 116153 2019639 ~ 2021213 (-) True CI01000004_02019772_02021213
CI01000004_01987895_01997457.mRNA mRNA downstream 139909 1986588 ~ 1997457 (-) True CI01000004_01987895_01997457
CI01000004_02198207_02227474.mRNA mRNA upstream 57650 2197584 ~ 2227474 (-) True CI01000004_02198207_02227474
CI01000004_02245903_02355814.mRNA mRNA upstream 105969 2245903 ~ 2356190 (-) True CI01000004_02245903_02355814
CI01000004_02458156_02458869.mRNA mRNA upstream 317861 2457795 ~ 2458962 (-) True CI01000004_02458156_02458869
CI01000004_02571511_02598869.mRNA mRNA upstream 431377 2571311 ~ 2600082 (-) True CI01000004_02571511_02598869
CI01000004_02608555_02621378.mRNA mRNA upstream 468229 2608163 ~ 2621378 (-) True CI01000004_02608555_02621378
TU29027 other downstream 362425 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1134499 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3038293 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3040059 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3480449 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 4394893 6534827 ~ 6545572 (-) True G29204

Expression Profile