RNA id: CI01000004_02608555_02621378.mRNA


Basic Information

Item Value
RNA id CI01000004_02608555_02621378.mRNA
length 1067
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000004_02608555_02621378
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2608163 ~ 2621378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGTGGTGGATCAGGATGATTCTCCAGCAGTGCTCTTTCAGCTGGAGGAAGAGCCATTTTCCTGGCCAGGGCCTAAGACGCTTCGTCTGCGCCGCACTTCACAAGGCTTCGGCTTCACTCTGCGTCACTTCATTGTGTACCCACCAGAGTCTGCAGTGCACTCCAATATTAAGGATGAAGACCATGGTCACAGAGGGAGACCACGGAACAGACTGGAGCCCATGGACACGATCTTTGTGAAGCAGGTCAAAGAGGGAGGGCCTGCTCACAGCGCCGGACTCTGCACTGGTAATTACACCAGCACTTCAAATGTACAGCACATTGTTTTGTTTTGCTTATTGATGTCTGATAATCTAAAACCCGATAATGGAACTTCAACAGGGGATAGGATAGTGAAAGTGAATGGAGAGAGCATCATTGGGAAGACATACTCACAGGTCATAGGGCTCATCCAGAACAGTCATACATTTCTAGAGTTGTGTGTGATGCCAAAAGATGAAGATATACTACAGCTGATCGACTGTAGCGTTAATCAAGAGCTCATCTCTGATATATTAGTTCTTTTCAGCTGCTGTGAACTTTTGAACATGCTCTATTTTGTTAGGAAATTCAGAGTTTGTAGAGGTGAAGAGCAGGATGTTCTCTGCGACAGGATGGAAGCTCTCGCTTCATGAAAGGCTGTTTGTGTTGAAGCAGCCGCTCAGCTGGGAGAGAGATGCCAGCTGGGGCATGGCACATGGGCGCTCTCTCTCACACAGAGATCTGATACAGAACTGCTGTGCAGTATCAGGGCTCAACGCTAAGGGTTTTTTCTACTGGCCTGGTCGGGCCAGTGGTTCAATTTTTTTACTTGCCCACCATAAAAAAGTAATAAATAAATAAATTAAAAAAGTTATTGTTTTCATTGTGTTTGACACATGCAACCTTAATAAATAAGGTTATTACACCAAATTTCAGATACCAGTTAGGGGTGTAAGGAATCGATACACTCTTGTCACCATTCTATACAAAGCATGCTACTGAACTCACGATATGATACTATCGTGATATTTTAAGCCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29967 lncRNA downstream 123000 2484232 ~ 2485163 (-) True G26568
TU29935 lncRNA downstream 151447 2456411 ~ 2456716 (-) True G26544
TU29932 lncRNA downstream 156078 2451869 ~ 2452085 (-) True G26541
TU29929 lncRNA downstream 162351 2445605 ~ 2445812 (-) True G26538
TU29920 lncRNA downstream 189507 2416891 ~ 2418656 (-) True G26529
TU29948 lncRNA upstream 3241 2624619 ~ 2629707 (-) True G26550
TU30008 lncRNA upstream 48935 2670313 ~ 2671760 (-) True G26609
TU30037 lncRNA upstream 109545 2730923 ~ 2731238 (-) True G26635
TU30038 lncRNA upstream 114217 2735595 ~ 2735829 (-) True G26636
TU30064 lncRNA upstream 270450 2891828 ~ 2892300 (-) True G26656
CI01000004_02571511_02598869.mRNA mRNA downstream 8081 2571311 ~ 2600082 (-) True CI01000004_02571511_02598869
CI01000004_02458156_02458869.mRNA mRNA downstream 149201 2457795 ~ 2458962 (-) True CI01000004_02458156_02458869
CI01000004_02245903_02355814.mRNA mRNA downstream 251973 2245903 ~ 2356190 (-) True CI01000004_02245903_02355814
CI01000004_02198207_02227474.mRNA mRNA downstream 380689 2197584 ~ 2227474 (-) True CI01000004_02198207_02227474
CI01000004_02137991_02139934.mRNA mRNA downstream 468229 2137366 ~ 2139934 (-) False CI01000004_02137991_02139934
CI01000004_02638015_02638848.mRNA mRNA upstream 16456 2637834 ~ 2638945 (-) False CI01000004_02638015_02638848
CI01000004_02664483_02667653.mRNA mRNA upstream 43105 2664483 ~ 2667653 (-) True CI01000004_02664483_02667653
CI01000004_02777722_02810321.mRNA mRNA upstream 156344 2777722 ~ 2810321 (-) True CI01000004_02777722_02810321
CI01000004_02812936_02825192.mRNA mRNA upstream 191475 2812853 ~ 2825192 (-) True CI01000004_02812936_02825192
CI01000004_02834634_02863535.mRNA mRNA upstream 211366 2832744 ~ 2863598 (-) True CI01000004_02834634_02863535
TU29027 other downstream 833222 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 653055 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 2556849 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 2558615 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2999005 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3913449 6534827 ~ 6545572 (-) True G29204

Expression Profile