RNA id: CI01000004_03187077_03196194.mRNA


Basic Information

Item Value
RNA id CI01000004_03187077_03196194.mRNA
length 1387
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000004_03187077_03196194
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3187077 ~ 3196198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGATGCGCAGTGTCTGTCACCATGCACACTCCAGAAGAAGACAGACTCACTACGTGACGTCACACAATCATGGCAGCCTCCTGAGTGCAACGAGAAAATGTCATAAAGACGAGCATCATTGTTTAGTTGCTTTTTGGCTAATATATCAATTTCAATTTTATTTTGATAAAATGTTTAACGCAACAGTGCAAAGAATAAGGACACCGGCTTTTAAAATAACTCAAAACTGCACATCAAAAGACTGTCATAGTGTCCTCAGTATGATTCCTCATGGACGTCGCTGCTTGTCCACCAGCTCTTGCTTATATGGGAAGATTCTTCCGAGGAAAAAACCTCGGGTGGTGCATGAAATAGCCGGACTGGAGCCGATCACTTATGCTGACAGGATGCACTTTGTACCTGGACTGGCAAAGCCTAGGTTTCCTACCTGGGACCGTGGATGGAAAGACCCGACTCACTATCAGTCCCCTAAACTAGAAGATATGCCTCTGCATAAAGACAAACCCTGTTACATATTCAATCAGAGGACGAATGTGCTGGAAGGTGTTCGACAAGCCCTCTGGCTCAGTAAGTCAGTCCTCATTAAAGGGTTACCTGCTCAGATTCTCAGCCTGGCTGAAGATCCAGCCAATCAGATTGAGAACCAAGATGAAAGAGTACAGAACGCCATTAAAAACTCCAGACTGTGGGACACTACAGAGCCACGGCCGCCCAGAGAGAGATTCTGTCCCTCGCTCTTGCACAGACTGCTTCACCTGTGTGGCGGCCTGCAGGTCACTCGTCCTGAGCTGGCCAAGAGGATTCTTGCTGAGAAATACAGTTTGGCAGCGACCTGGAGGAGAGGAGAGGACGTATTCCAGGTCAGAGGTCAGAATGGGTTGCTTTTGAACTCCATGAACCCTGTGCCTGTGTTGGCTGGAGAGGAGCAGATCCAGAGCACTGCTGATCAGGCTCTGGAGACCTTCTACCCCATCGCACCCACCATCGACCTGCAGTGCACACATGTCTACCAGGAGAAGAACGACACAGGTTTCAGAGAGGGCTATCCTTACCCTCATGCCCACACTCTCTTCCTGATGGAGATGGGAAACACCCCAAAACTCCTCCCCGAGCAGCTCCGTGCTAAGATGGTGATGTTCACCTTTGGAAACGCACTGGCCCGAGCTCAAGCCCTGTATGGGACGGAGCCCAGAGTTCTGGAGAAGCCCATCGTGGTGCAGAGTGTGGCCACTAATGGCCGTCTCTTCCAGTTCGTGGTGTTTCAGCTCAACACCACTGACCTGCAGTCTGACAGCGGAGTGAAGAATTTGGTATGGGTGGATGAGGACCAGCCTCTCTATGAGTTTGCCAAGGTCCGGCCTTATATCAAGAAGAAAGTTGTGAAG

Function

GO:

id name namespace
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K17418 MRPL37; large subunit ribosomal protein L37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30183 lncRNA downstream 7719 3172410 ~ 3179358 (-) False G26754
TU30185 lncRNA downstream 7719 3174448 ~ 3179358 (-) True G26754
TU30165 lncRNA downstream 54312 3132556 ~ 3132765 (-) True G26744
TU30173 lncRNA downstream 64817 3119950 ~ 3122260 (-) False G26752
TU30175 lncRNA downstream 64817 3121872 ~ 3122260 (-) True G26752
TU30272 lncRNA upstream 18692 3214890 ~ 3215202 (-) True G26820
TU30231 lncRNA upstream 71485 3267683 ~ 3275721 (-) False G26788
TU30224 lncRNA upstream 74902 3271100 ~ 3275721 (-) False G26788
TU30227 lncRNA upstream 74902 3271100 ~ 3274737 (-) False G26788
TU30262 lncRNA upstream 104601 3300799 ~ 3306425 (-) True G26810
CI01000004_03133701_03141953.mRNA mRNA downstream 45098 3133674 ~ 3141979 (-) True CI01000004_03133701_03141953
CI01000004_03106070_03109051.mRNA mRNA downstream 78026 3106042 ~ 3109051 (-) True CI01000004_03106070_03109051
CI01000004_03070803_03073454.mRNA mRNA downstream 113596 3070616 ~ 3073481 (-) True CI01000004_03070803_03073454
CI01000004_02953160_02955378.mRNA mRNA downstream 231587 2953146 ~ 2955490 (-) True CI01000004_02953160_02955378
CI01000004_02834634_02863535.mRNA mRNA downstream 323479 2832744 ~ 2863598 (-) True CI01000004_02834634_02863535
CI01000004_03204599_03205569.mRNA mRNA upstream 8374 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03214098_03222707.mRNA mRNA upstream 17900 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03238528_03240932.mRNA mRNA upstream 42160 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
CI01000004_03244252_03265862.mRNA mRNA upstream 47705 3243903 ~ 3266047 (-) True CI01000004_03244252_03265862
CI01000004_03277921_03285364.mRNA mRNA upstream 81543 3277741 ~ 3285364 (-) True CI01000004_03277921_03285364
TU29027 other downstream 1412136 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 78235 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 1982029 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1983795 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2424185 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3338629 6534827 ~ 6545572 (-) True G29204

Expression Profile

CI01000004_03187077_03196194.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

CI01000004_03187077_03196194.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_03187077_03196194.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030604 True 1506 mRNA 0.49 7 NC_007113.7 10914023 ~ 10931770 (+)
bowfin (Amia calva) AMCG00004988 True 1308 mRNA 0.55 7 CM030140.1 11981168 ~ 11984864 (-)