RNA id: CI01000004_03277921_03285364.mRNA


Basic Information

Item Value
RNA id CI01000004_03277921_03285364.mRNA
length 1413
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000004_03277921_03285364
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3277741 ~ 3285364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCGCCTGTCCTATACTCGAGTGAAGTATCTCTTTCTCACATGGCTTGCTGTATTTGTGGGCAGTTGGGTTGTGTATGTGCAATACTCTACTTACACTGAGCTGTGCAGAGGACGAGAATGCAAGAGCATCATTTGTGACAAATACAGCAAAGGTATCATTGATGGATCTGCCTGTAGCAGCCTGTGTGAAGAAAGCTCACTATACTTTGGAAGGTGCCTCTCCACCAAGCCAAACAATCAGGTCTATACAGGCAGCTGGGGTGACCAGGACGGCATCATTAAGTGTCAGCTGAGTGACGTCCTGCACTATGAGCTGGGAGAGGAGCTGGAGCCAAAGAAAGAGATCGCACTCTTTGACAAACCCACTCGAGGAACCTCTGTAGAGAAGTTCAAAGAGATGGTTGCCAGTCATTTGAAGGCGAAAGTTGGAGAGCAAGCCAGTCTCCCCAGTTTGGTAAGCCTGATTCTTTCAGTGGCGGACAGCAATAAAGATGGCCACATCTCTCTGCCCGAGGCCAAGTCTGCTTGGGCTCTGCTGCAGCTCAACGAGGTTCTGCTGGCAGTGGTGCTCCAAGGCCGAGAGCACACACCTAGACTGTTGGGCTTCTGTGGGGACCTGTACATGGTGGAGCGGGTGCCTCACGCTCCGCTGTACGGCCTCAGTCTGCCGTGGCCCATGGAACTATGGATCCCTACGGGCATGCGGCGAAGCATGGACCAGTGGTTCACTCCTTCCTGGCCTCGCAAGGCCAAGATCTTTATCGGCTTGCTGGAACTTATAGAAGACATCTTCCACGGTACCTTTGGGAGCTTCTTAATGTGTGACATGAGAGCCAGTTCTTTCGGGTACACCGATCGTCACGACCTCAGGTTGGTGGACGGGCGGCGCGTAGTTGCCGAGGAGGCCTTCAAACAGGCCATGATCCTTCAGCGCTGTGAGGACGATGAGGACTGCGTGTACGGTGTGGACTGTAGGACTTCGTGTGACCGCGCAGAACACAGGTGCATGCCCGAGGTGGCTCAGCCCAACCTGGCCAGGGCCTGCAGAGCTATGAAGGATTACCTCCTACGAGGAGCTCCCTACTATATACAGGAAGAGCTGGAAAAGCAGCTGTATGCCTGCATGGCTCTCAAAGGTTCAGCCGAGCAGATGGAAATGGAGCACTCGCTCATTCTCAACAACCTCAAGACCCTGCTGTGGAAACAGATCTCACACACCAATGACTCCTGAAGGAAAAAGATGCGCTGGTGACTACATTCAGATTCCTGAATGTCTTCTAAAGCACTTCAGGCCATTGTGAATCTGGCTGGAGATTACTATGCTGGTAGGAAAGTGCTGGAAAAAATGCTGATGGCAATATTCAGTGCTGCTTTGATACTAAAGTTCTCTTTAGAATGAGGTAGAATTAAA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU30231 lncRNA downstream 2020 3267683 ~ 3275721 (-) False G26788
TU30224 lncRNA downstream 2020 3271100 ~ 3275721 (-) False G26788
TU30227 lncRNA downstream 3004 3271100 ~ 3274737 (-) False G26788
TU30272 lncRNA downstream 62539 3214890 ~ 3215202 (-) True G26820
TU30183 lncRNA downstream 98383 3172410 ~ 3179358 (-) False G26754
TU30262 lncRNA upstream 15435 3300799 ~ 3306425 (-) True G26810
TU30264 lncRNA upstream 45381 3330745 ~ 3332243 (-) True G26812
TU30263 lncRNA upstream 57450 3342814 ~ 3355165 (-) True G26811
TU30255 lncRNA upstream 60636 3346000 ~ 3351924 (-) True G26803
TU30289 lncRNA upstream 69851 3355215 ~ 3355472 (-) True G26837
CI01000004_03244252_03265862.mRNA mRNA downstream 11694 3243903 ~ 3266047 (-) True CI01000004_03244252_03265862
CI01000004_03238528_03240932.mRNA mRNA downstream 36250 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
CI01000004_03214098_03222707.mRNA mRNA downstream 55034 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03204599_03205569.mRNA mRNA downstream 71673 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03187077_03196194.mRNA mRNA downstream 81543 3187077 ~ 3196198 (-) True CI01000004_03187077_03196194
CI01000004_03433963_03436906.mRNA mRNA upstream 148468 3433832 ~ 3436906 (-) True CI01000004_03433963_03436906
CI01000004_03475454_03478135.mRNA mRNA upstream 189530 3474894 ~ 3479485 (-) True CI01000004_03475454_03478135
CI01000004_03505898_03508656.mRNA mRNA upstream 220434 3505798 ~ 3508770 (-) True CI01000004_03505898_03508656
CI01000004_03514180_03525227.mRNA mRNA upstream 228309 3513673 ~ 3525582 (-) True CI01000004_03514180_03525227
CI01000004_03556991_03559357.mRNA mRNA upstream 271118 3556482 ~ 3559357 (-) True CI01000004_03556991_03559357
TU30225 other downstream 2020 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 1502800 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31341 other upstream 1892863 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1894629 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2335019 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3249463 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 3345929 6631293 ~ 6631907 (-) True G29388

Expression Profile

CI01000004_03277921_03285364.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

CI01000004_03277921_03285364.mRNA Expression in each Bioproject

Bar chart with 43 bars.
CI01000004_03277921_03285364.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030593 True 3113 mRNA 0.45 5 NC_007113.7 10642047 ~ 10687230 (+)