RNA id: TCONS_00013048


Basic Information

Item Value
RNA id TCONS_00013048
length 2266
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_006780
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35750690 ~ 35765028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGACGGCACTTTTGCATTTAAACTACTATTCAAAAAAAGTAATTTGCTAATGAATAAAGTTTCATGAAACATTACTAGGAAGCATAAATAAACTTTCCTCCACAACCGCCATAGCATAGCAAATGTTAAGCCAGATCGCCCAAAACACAATTAACGCTGCAAATTTGCTATAGCGCATCAGCACATCTATATGGCGCATCAGCACTACAAACAGAGAATGCGCCTTCACGAGCTATTGGCTGAGCGGAATTTCCGCCTGATTCCGGAAATGGACGTGGCAAGATGACAAGCTCCTGATGTGCTTCCTGTTGTAACTCTTGTTAAACTATCAGCTGTTAGCCGAACCTTACATTGCACAGACTGGATGTAATAGCCGTTTTTTCCAGCTTTGTCTTTCTAATGTCTCGATAACGCTTCCGGGGGCTCAGCGGCGGCGATGCGGCTGTTTTGGCGCTGGTTTTGGGGACTGATTTGTGTCGGGGTGTCTGCAAATCGTGCAGGATCTCCAGTGTTTTCAGATGAGATCCCCTTCAAAATTAAATGGCCAGGGGCAGACTTTACGCTGTCAACGTCAGGAGGCCTGTACAGAGAAGACGACTATGTTATTATGACaactacagaaaaagaaaagtacaAGTGTTTATTGCCATCTTTGACAAGCAATCTGGATGTGAGTTTATTCATtgggattttttattttagcttgagaagttaaatataatatacatttaaaattattctTCTGAGATGTAAAGTTCCTAACTGTTTTCTCTTTAAGCTTTAAAGCTGTAAGTCGGATCTGACCATCACATAGTTGACTCTGACTTTATGATTAAAACTTTGAAAAAGCAGATAGTCTGAAGTTGATGTTAGCAACAAGGATATGACAAAAACATGTTTGCTAAAGCATGTTACGAACATTTTAGCaacacataaatacataatattaaaaactgtggttgtgtgttttatgATTACCACACATTAACCATGGTTTTCTGCACCAACCATAGTTTAATGTACATAATTTATTGTGTGTCTCTTTTGAAGGATGAGGTGAAGGAGTACAGCGGGCCGAGTCCAGCTGCTTTGCTGGAGCCGTTATTCAAACAGAGCAGCTGCTCTTACAGGATTGAGTCATACTGGACCTATGAAGTTTGCCATGGGAAACATGTGCGGCAGTACCACGAGGACAAAGAGACAGGGCAGAAAATGAACATTCAAGAATACTATCTGGGGAACATGAATAAAAAAGATGGCGCAGAATCAGAAACAGAAAAATCCAGTGACTCTGAAGCAGAATCGCCAAACACCAACACAGAGATACCAACAAAGAATATAGAGGGTCAGCTGACTCCATACTATCCCGTAGAGATGGGACATGGGACAGAATGCACTCTGAAACAGAATCAACCTCGCTCTACCACAGTGCTGTACGTCTGCCATCCTGAGGCAAAGCATGAGATCCTCACAATCGCTGAGGTCATCACCTGTCAGTATGAAGTGGTGGTGCTCACACCCCTGCTCTGTTCTCATCCCAAATACAGGTTCAAGAGCTCTCCAGTGAATGACATCTTCTGCCAGGCTCTGGGTGGTTCACCTCTCAGACCTCAGAGCCTGTCCCAGATGGAACACGAGCAGGAGGAGCTGCTCAAACCACCCTTCAGCACCAGCAGTGAAAGGGGATCCAGGGAGGACACATCTCCAGTGAAGGAAGAGGCCTATACCTCTACCCATAAGCCCCTGACAGTGGGTGGTCAAGCCCAGGTCACCGTTGGCACTACGCACATCTCCCGTCTGACTGATGAACAGCTGATTAAAGAGTTTCTGAGCGGCTCATACTGTCTGCATGGGGGTGTTGGTTGGTGGAAGTATGAATTCTGTTATGGAAAACATGTTCACCAGTATCATGAGGATAAAGAGCAAGGGAAGAACATCGTGGTGGTGGGCAGCTGGAACACTGAGGATCACATGAACTGGGCCAAGAAGAATGTGGCTCGATCTTATCATCTGAAAGATGATGGAGCACAAAAAGTCAAGGTTGTGTCTCACTTCTATGGACATGGAGATCTTTGTGACCTAACAGGGAAACCGAGACAGGTTATAGTCAAGCTAAAGTGTAAGGAGTCTGAATCCCCTCATGCTGTTACAGTGTACATGCTGGAGCCTCAGACATGTCAGTATATCCTCGGGGTTGAGTCACCTGTAATCTGCAAGATCTTGGACACTGCGGATGAAAATGGACTTCTTTCAATTCCTAGCTAG

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-030521-15 Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hatching gland; and otic placode. Orthologous to human ERLEC1 (endoplasmic reticulum lectin 1).

Ensembl:

ensembl_id ENSDART00000190217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013044 lncRNA downstream 223849 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 461817 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013868 lncRNA downstream 461879 35205297 ~ 35289375 (-) False XLOC_006774
TCONS_00013872 lncRNA upstream 163776 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013080 lncRNA upstream 560098 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013088 lncRNA upstream 768964 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 770294 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 807681 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013043 mRNA downstream 223557 35510893 ~ 35527697 (-) False XLOC_006778
TCONS_00013042 mRNA downstream 253668 35484229 ~ 35497586 (-) True XLOC_006777
TCONS_00013040 mRNA downstream 278723 35391610 ~ 35472531 (-) False XLOC_006776
TCONS_00013039 mRNA downstream 291326 35391609 ~ 35459928 (-) False XLOC_006776
TCONS_00013035 mRNA downstream 699357 35041892 ~ 35051897 (-) True XLOC_006772
TCONS_00013049 mRNA upstream 26607 35787873 ~ 35844961 (-) False XLOC_006781
TCONS_00013050 mRNA upstream 39947 35801213 ~ 35808904 (-) False XLOC_006781
TCONS_00013052 mRNA upstream 119307 35880573 ~ 35892243 (-) False XLOC_006782
TCONS_00013053 mRNA upstream 119398 35880664 ~ 35892305 (-) False XLOC_006782
TCONS_00013054 mRNA upstream 127883 35889149 ~ 35892243 (-) False XLOC_006782
TCONS_00013045 other downstream 158877 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 291323 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013038 other downstream 380570 35370569 ~ 35370684 (-) True XLOC_006775
TCONS_00013037 other downstream 529641 35206835 ~ 35221613 (-) False XLOC_006774
TCONS_00013036 other downstream 556495 35182994 ~ 35194759 (-) True XLOC_006773
TCONS_00013051 other upstream 65401 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013058 other upstream 201084 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013072 other upstream 374150 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013079 other upstream 559825 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other upstream 560165 36321431 ~ 36330899 (-) True XLOC_006796

Expression Profile

//