RNA id: CI01000004_06539836_06541252.mRNA



Basic Information


Item Value
RNA id CI01000004_06539836_06541252.mRNA
length 1358
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000004_06539836_06541252
representative False

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6538904 ~ 6541252 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTCACATGGTTTCGGAGCAGCTGGGCCTGGGGCACAACCTTGACCTGTCTGATACCATGGTGCAGCAGAAGCTAGATGAAATCAAGGAGCAGATCAAGAGGGAGATCCGCAAAGAGCTGAAGATCAAAGAGGGGGTGGAGAACCTTAGAAAGGTCACCACTGAAAAAAAGAGATTGGCATATGTTGATAATATGCTCAAGAAGTCCAACAAGAAGTTAGAGGAGCTGCATCAAGAGCTGCAGGAACTCAACGCGCATATTGTGGTGAAGGATCCAGAGGATCTTCTCTTAGTGCAAGAGGAATGTTGCCGGGTGTCACACCTCTGTGTTGACCTCCTCAGTCTGTGTCCGCTGAGCAGAAATCAGCAGATCTGCATCCAGACGCGGCTGGGAGACAACAGCGCTCCAGTGCCAGTGCCTCAATGATGATGTCATAGTGCTATCTGTTGCTCAGCACTTGTCTTGTTCAGACAGTACACTTTGTGAGACTGCTGCCCTCACTGCTGACCCGGGTCAAGCCTTTTGCACCTCATCATATTACTTATTACATCAAGGGCACATGCACAGTTGTTTGTTTTTGCGTATAGCATGTACACTACCGGTTCAAAGTTTGCAATAATTAAGTTTTTTTTTTTTTTTTTATGTTTTGCTGCTCACGTTGCCCAACGTGCTGGGTAGTTTTATTTAACTCATATTGCTTGCTTAAAATGAACCCAAAATATGTTGGAAATGAACATTTATTAATAAGTTTAATGAATAATAATTAAACAATAAACATTTATTAAATTGCTTATTAATATATTTTCACCTTTTTATTATTATTGTTGCCTCTAGTAATTATGTGTTTGACTTTTAATTTCCAACCTATTTTGGGTTCATTTTAAGTCAGCCATATAGTAATTTTTAAACAATAGTTGGGTTCAATAAAACTACCCAACAGGTTGGGTCAAACATTTAACCCAACCGCTGGGTTAAAACAACCCAATCGCTGGGTTTGTTCATTTTCAACCCAGCATTTTTTAGAGTGTAGTATGGTTTCCACAAAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAATAAGAAATGTTTCGTGAGCAGCAAATCGGCATATTAGAATTATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGATTTGCCATCACAGGAATGAATTACATTTTAAAATATATTAAAATAGACAACAGTTTTTTAAATTGTAAAATTTCATAACCGTTTTTTACTGCGTTTTTTGATCAAATAAATGTAGCCTTGGTAAGCTTAAGGGACATCTTGCAAAAACATTAAAAAATCTTTTGACTTGTAGTGTAAGTGCAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33029 lncRNA downstream 135183 6399639 ~ 6403721 (-) True G29188
TU33060 lncRNA downstream 240836 6285477 ~ 6298068 (-) True G29208
TU33085 lncRNA downstream 363004 6175696 ~ 6175900 (-) True G29233
TU33009 lncRNA downstream 493597 6044360 ~ 6045307 (-) True G29172
TU32976 lncRNA downstream 569775 5968478 ~ 5969129 (-) True G29153
TU33260 lncRNA upstream 86322 6627574 ~ 6627791 (-) True G29385
TU33261 lncRNA upstream 86724 6627976 ~ 6628269 (-) True G29386
TU33262 lncRNA upstream 87814 6629066 ~ 6629470 (-) True G29387
TU33266 lncRNA upstream 113971 6655223 ~ 6656385 (-) True G29391
TU33278 lncRNA upstream 229110 6770362 ~ 6770583 (-) True G29402
CI01000004_06510788_06533217.mRNA mRNA downstream 5522 6510400 ~ 6533382 (-) True CI01000004_06510788_06533217
CI01000004_06497733_06501592.mRNA mRNA downstream 37312 6497705 ~ 6501592 (-) True CI01000004_06497733_06501592
CI01000004_06470183_06483783.mRNA mRNA downstream 55121 6470183 ~ 6483783 (-) True CI01000004_06470183_06483783
CI01000004_06441871_06454719.mRNA mRNA downstream 83891 6441476 ~ 6455013 (-) True CI01000004_06441871_06454719
CI01000004_06419749_06423949.mRNA mRNA downstream 114917 6419187 ~ 6423987 (-) True CI01000004_06419749_06423949
CI01000004_06547877_06549227.mRNA mRNA upstream 6138 6547390 ~ 6549227 (-) True CI01000004_06547877_06549227
CI01000004_06555703_06558890.mRNA mRNA upstream 14225 6555477 ~ 6558890 (-) True CI01000004_06555703_06558890
CI01000004_06569673_06570071.mRNA mRNA upstream 28344 6569596 ~ 6570171 (-) True CI01000004_06569673_06570071
CI01000004_06677179_06740196.mRNA mRNA upstream 135927 6677179 ~ 6740196 (-) True CI01000004_06677179_06740196
CI01000004_06805399_06814604.mRNA mRNA upstream 263965 6805217 ~ 6814604 (-) True CI01000004_06805399_06814604
TU31692 other downstream 911390 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1335180 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 1343801 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 3263183 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 4763963 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU33263 other upstream 90041 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 1423112 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1813246 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1813246 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2836685 9377937 ~ 9406921 (-) True G30316

Expression Profile