RNA id: TU33056


Basic Information

Item Value
RNA id TU33056
length 358
RNA type TUCP
GC content 0.50
exon number 2
gene id G29204
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6534827 ~ 6545572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGTTCTGCCACCCGCCTCCCCTTGTTCCGATATTAGCAGCAGAGCTCTACGTTCACCCCAAATGCGTGGATCTCCGCTCCAAGCCAGGGTCTAAACCCCTACATTTGCAACAAACCATCAGCTCAACCATGGGACCCCCTCCGTCTCCCCGCCATGCAAAGGATCATACGCAAAATAAAAAGCTTTTCGCTTGAGACGGAAACATAACAGCCTTGTTTTTTGGGAGTGACTCACCTCCCCTTCCCCAGAGTTTGATTCAAAAGAGTTCACAACCAAGATGGCCGCCGATCCCATGCAGGCTCACATGGTTTCGGAGCAGCTGGGCCTGGGGCACAACCTTGACCTGTCTGATACCATGGTGCAGCAGAAGCTAGATGAAATCAAGGAGCAGATCAAGAGGGAGATCCGCAAAGAGCTGAAGATCAAAGAGGGGGTGGAGAACCTTAGAAAGGTCACCACTGAAAAAAAGAGATTGGCATATGTTGATAATATGCTCAAGAAGTCCAACAAGAAGTTAGAGGAGCTGCATCAAGAGCTGCAGGAACTCAACGCGCATATTGTGGTGAAGGATCCAGAGGATCTTCTCTTAGAGTGCCCTCTTACGCTGGACAGCCCTAAAAGTGAAGCACGAACATGCACTAGCAGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33029 lncRNA downstream 131106 6399639 ~ 6403721 (-) True G29188
TU33060 lncRNA downstream 236759 6285477 ~ 6298068 (-) True G29208
TU33085 lncRNA downstream 358927 6175696 ~ 6175900 (-) True G29233
TU33009 lncRNA downstream 489520 6044360 ~ 6045307 (-) True G29172
TU32976 lncRNA downstream 565698 5968478 ~ 5969129 (-) True G29153
TU33260 lncRNA upstream 82002 6627574 ~ 6627791 (-) True G29385
TU33261 lncRNA upstream 82404 6627976 ~ 6628269 (-) True G29386
TU33262 lncRNA upstream 83494 6629066 ~ 6629470 (-) True G29387
TU33266 lncRNA upstream 109651 6655223 ~ 6656385 (-) True G29391
TU33278 lncRNA upstream 224790 6770362 ~ 6770583 (-) True G29402
CI01000004_06510788_06533217.mRNA mRNA downstream 1445 6510400 ~ 6533382 (-) True CI01000004_06510788_06533217
CI01000004_06497733_06501592.mRNA mRNA downstream 33235 6497705 ~ 6501592 (-) True CI01000004_06497733_06501592
CI01000004_06470183_06483783.mRNA mRNA downstream 51044 6470183 ~ 6483783 (-) True CI01000004_06470183_06483783
CI01000004_06441871_06454719.mRNA mRNA downstream 79814 6441476 ~ 6455013 (-) True CI01000004_06441871_06454719
CI01000004_06419749_06423949.mRNA mRNA downstream 110840 6419187 ~ 6423987 (-) True CI01000004_06419749_06423949
CI01000004_06547877_06549227.mRNA mRNA upstream 1818 6547390 ~ 6549227 (-) True CI01000004_06547877_06549227
CI01000004_06555703_06558890.mRNA mRNA upstream 9905 6555477 ~ 6558890 (-) True CI01000004_06555703_06558890
CI01000004_06569673_06570071.mRNA mRNA upstream 24024 6569596 ~ 6570171 (-) True CI01000004_06569673_06570071
CI01000004_06677179_06740196.mRNA mRNA upstream 131607 6677179 ~ 6740196 (-) True CI01000004_06677179_06740196
CI01000004_06805399_06814604.mRNA mRNA upstream 259645 6805217 ~ 6814604 (-) True CI01000004_06805399_06814604
TU31692 other downstream 907313 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1331103 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 1339724 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 3259106 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 4759886 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU33263 other upstream 85721 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 1418792 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1808926 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1808926 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2832365 9377937 ~ 9406921 (-) True G30316

Expression Profile