RNA id: TCONS_00013063


Basic Information

Item Value
RNA id TCONS_00013063
length 3991
RNA type mRNA
GC content 0.39
exon number 13
gene id XLOC_006790
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36037970 ~ 36050327 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAATTGCAGAAATGAGCCCACAGACAGTAGCAGTTTTAGGTCTCGCCCTGAGCCTTGGGCTAGTTGTAAGTGGTTTTCCTGCGGAACAGCCAGAAAATGGGAAGCACTGGGTCGTCATTGTGGCTGGGTCAAATGGCTGGTACAATTACAGACACCAGGCTGATGTGTGCCATGCGTATCAGATTGTCCATAAGAATGGGATTCCTGATGAGCAGATTGTTGTCATGATGTATGATGATCTTGCTGAGAGTCCTGAtaACCCTACAAAAGGAGTGGTCATAAACAGACCAAATGGATCAGATGTTTACAAAGGAGTGCTAAAGGACTACATTGGGGACgacgTCACTCCTGAGAACTTCCTGGCGGTGTTGAAAGGTGATGCTGCTAGTGTGAAAGGAGGATCTGGAAAAGTGCTGAAAAGCGGTCCGAATGatcatgtgtttgtgtatttcaCTGATCACGGAGCACCAGGTCTGCTGGCCTTCCCTAATGATGATCTCCATGTTGACGACCTGATGGATACCATCAAGTACATGCACAGCAACAACAAATACAAGAAGATGGTGTTTTACGTTGAGGCCTGTGAATCTGGCTCCATGATGAAACCTCTGCCTGTTGACATTAATGTTTACGCTACCACCGCTGCTAACCCTGATGAGTCCTCATACGCCTGCTACTACGACGAAGCCAGAGACACTTATCTGGGAGACTGGTACAGCGTCAACTGGATGGAGGACTCTGATGTAGAGGATCTGAGCAAAGAGACTTTGGCCAAACAGTTCAAGATCGTAAAGGCCAAAACCAACACCAGCCATGTGATGCAGTATGGAAACAAGacaCTGTCCCACATGAAGGTGATGGCATTCCAGGGTAGCTCAAAGGGTCTTGATAAGGCAGTGGAGCCAGTGTCGTTGCCTGTGATCGCTGAACATGACCTCATGAGCAGCCCCGATGTGCCACTTGCCATCCTGAAGAGAAAACTGCAGAAGACCAATGATGTTGATGCTGTTGTTGGTTACCTGAATGAAATCCACGCTCATCTACAGGTGCGGGAGCTGCTTGGAAACACTATGCGTAAGATCGTGGAGCATGTTGTGCAGGACAAAGAGGAAGTGCAGGATTATCTGGATGGACGTTCAGACCTCACACAGTACAATTGTTACAAAACAGCCGTCAGACACTACAAGAAACACTGCTTCAACTGGCATGAGCAGAAGTTTGAATATGCTCTGAGACACCTGTATGCTCTAGTAAACCTCTGTGAGGGAGGATACCAGGCCCACAGAATCACTGCAGCCATGGACGATGTGTGTTACTTCAGGGAGTAGAAATGTGAACTTGAGCCACCGAGGATTTATTATGGATGAACTACACTTTGCACAAAAGAGTCTGACTGTGGGCAGAAATCAGTTTCATCACACACAGCTTTTGATCCTTttgaaaatgtttcttttttaaatgaggatttgcacttttaaaattattttatgtaatgttttacttttttctttcatattttgttttttaaaggaagCATAAACTCGAGAAAATCCAAACACATTTTCctgttaaacttttattttttagtttttttttaatcggaTGCCTCATAAGTGAAATCAAATGGAAAGTCTGCTTTAAAGTGACACGGCTACAGTGGCAAAGCTTGTTTTTGCACCTCAGTTACTGCCGACGTTAGTAAGAAATGCATTTTCAGAAACCAAAGCGTTTAAATGTCCAGTTGTACATGATGCTAATCTATTGCGTTAAAACAATTTCAAACAAACACTAGCTAGACACTATTTGCTACAGTATGTGTTGCActaagattttgtttttattttttttaagccgATGTTTTTTTAGGCTGATCTGCTTGTTTCCTGAGCCATGATGATCCCCTTTTCTCCCCCTATGTAGTAAAATCAAATGAGCTCTTCTTTGGTTATTAGCTAAATGTCTACCCATCAAACTAACCTGAAGTCTGTGGTCATACTTAAGAAGTGTCTTAAATAACTGAGCGCTGAATGAGAAGGTGTGTTTAGTGTCGGGCTGTGCTATTATGTCAAGTGGCCTCCGTTTAGAGCAAATTGAGGCCTGAAACTGAACTGAAGGGGGTGTAATGAATGACAAGTGTGTGCTGGAGTTAGGGAAATGAGTTTGCACTGACAACCACTGTGTGAAGCAAAACACTGAATGACTACATGTTTCCCTGTCAATGTATAATCTGTTAAGCAGTGAATTATTGGTTTATAAAAGGAATAATAAACACTGATGGAGTGGAATTTGTTGAATTGGTCTcttcattttctttaaatataactttaatgttttattaatgttgtaAATTGTGgttgtgaaaatgttcatgtaaACTACGtaaacaaaatagtattttgctTCACTTTTAGAACAAACAAGTTATAAAACCTGtcacttttcaaaaggtacaattaAAGGTACTTATTAATGCCtaaaaggtacaaatgtgtacctcaaaggtacaaaagtgtaccctaaaggttTAAGATCATAGCAATTAAGCTATAAAAAGATGAAAGTTACAGCCTCTGGggcagttttttttacatttttatttctgagtgttttattagtaaaaaataatgttcagaattaaaaaaaaaaaattattgatttttaattaaatattacttttttttagcaACACATAAATCAGTGAAACAtggctttaaagggcacctatgattaaaaaaaaacatcttttgtaagctgtttggacagaactgtgtaagtatagtgtgtccaccgtcatattggagtgatataaagacaataaaggttaaaataggatccaaatccctcccgttTTGAGGCCGACTGCAactggtttccccgcccactgaattgattgacagccgcatattagTATGTCTCCGTAATAACCAGTATAATCCAAGCAGCAACCTCCCACTCTCCCTCAGGAAGcaaatatggaagtaactgaaactgcaatttatcgaaattccgctagtcctggctccatatggaGCAAGTATctaaatggccaactttacagcagaaaaaaaggtgtttacagcctggtacaaagaacaattTTGGTTCATTTAGCTGATATTACCCTTCATGGCAACTGTGAGGGGGGTAAATTTATTTAtgactcatccgtttcctttatattaggttatattaagtctgcataattaagggcgtggccacttgagtgacagctaggtctcgctggtcgccgtcactctacctcagctgactccggcaGATCATTAAtaagcattaaaggcacaggcagcaaaaacagctacattgtgttcaaagcagaaaataccaatattctgaaaggtttaataaataatctgactggtgttttgagctgaaaccttacagacacattctggagacacaaaaaagACTAATCTAAAATCTCTAAAAAAGGATAAaattggtgccctttaaatttaacttttgtgtctttttctttctGAGTAAAAATAGTGTCAGACGCATTTAGATAAAGAATACTTTTATCATTTGATTTTGTTCAGGCATCAAAACAGGCTGTACAGTCGTTGACCCAAGtatgtttaatgtaatttaaataattattgagttcattttacaaaacaagctgctgaaaagcaaatccattcaATATGTAATCTTTCagatctgatttttatttttattttgttgatttcTTAGGGAATATTAGTTCAGCCATTTTGTTCAAATCATTTTAGATACTTTTCCCTCTCCAGTTTCTCGTGTTCTTCTTTTTGCTTTTCAGCTGTGATCTTGAATGAAGTCTTACGATCTACATATTAACAGTTTCTGGAAAACCCAACAAAATGCACATTCTGCGTGTTGTTATGTAACACCAACAAATTAGAAATGTCCAGCATATTATCTATTGCACTCCTTTGATATTTCTGTGTATTTTGTCTTCTTTGCTCAGATAAATTATATGTACACCAC

Function

GO:

id name namespace
GO:0006624 vacuolar protein processing biological_process
GO:0030502 negative regulation of bone mineralization biological_process
GO:0042246 tissue regeneration biological_process
GO:0031103 axon regeneration biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045668 negative regulation of osteoblast differentiation biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04612 Antigen processing and presentation
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-021030-1 Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

Ensembl:

ensembl_id ENSDART00000189978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013872 lncRNA downstream 112486 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 510565 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 748533 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013080 lncRNA upstream 272356 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013088 lncRNA upstream 481222 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 482552 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 519939 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 538762 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013062 mRNA downstream 3388 35995238 ~ 36034582 (-) True XLOC_006789
TCONS_00013061 mRNA downstream 52198 35984621 ~ 35985772 (-) True XLOC_006788
TCONS_00013060 mRNA downstream 53440 35983997 ~ 35984530 (-) True XLOC_006787
TCONS_00013059 mRNA downstream 60984 35974362 ~ 35976986 (-) True XLOC_006786
TCONS_00013056 mRNA downstream 129695 35904335 ~ 35908275 (-) False XLOC_006783
TCONS_00013066 mRNA upstream 4977 36053985 ~ 36134401 (-) False XLOC_006791
TCONS_00013070 mRNA upstream 5921 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013069 mRNA upstream 5921 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013068 mRNA upstream 5921 36054929 ~ 36134317 (-) False XLOC_006791
TCONS_00013067 mRNA upstream 5921 36054929 ~ 36134317 (-) True XLOC_006791
TCONS_00013058 other downstream 75504 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013051 other downstream 195381 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013045 other downstream 445593 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 578039 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013038 other downstream 667286 35370569 ~ 35370684 (-) True XLOC_006775
TCONS_00013072 other upstream 86408 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013079 other upstream 272083 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other upstream 272423 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013082 other upstream 350252 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013090 other upstream 481412 36530420 ~ 36535072 (-) False XLOC_006800

Expression Profile

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