RNA id: CI01000004_08823382_08844233.mRNA



Basic Information


Item Value
RNA id CI01000004_08823382_08844233.mRNA
length 2638
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000004_08823382_08844233
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8822749 ~ 8844345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAATGGTGAGTAAAAGATTTAGGTCTTACATCTTTCGGTCTGTCACAGCATGATGCGCCTTATGCTGTCATTTGTAATTATAATTTTACAAAATTTTAATGAAATGTTAGACTCAATATAAGAAACACAGCATGTGTGTTACATGCTGATTTCCCCATGAAAAATAGACATTTGCTGCCCCCTTGTGAATGAGACCTTTTACCTTTGGTCTGTTGAGTGTTTTCTCTATATTCGTATTGTCAAAGGTGATTTATGCCACATATAAGCCTAATATCAACCAGAACTTTGCTTTTGATTCATATTTCAAATATTTAAAGGTATAGTCCACCCAAAAATGTCAATTCTGTCATCATTTACTCACCCTCTTCATGTCTTTTCAAACCTGTATGCATTTCTTTCTTCTTGTGAACACAAAAGAATATTTTTTGATGAATGTTGATAACAAAAGAGTTAAATTAACCAAAATTTACTTCCATTTGTAATTCATGTCCATATAATGGAAGTCAATCTCTGTATCTCTGCGGCACATACAGCCTCCAACAGTTCCCTGAGGTAAACCTGAGGTACAACACAAACACACACGTCTCAAGGCTCCTGAACAGTCATTACATGTTGAATCTGTCTGAGACATGAGCTCTCTGAAAGCGAGAAAAGCGAACACATCGACAGTCGTACATCTACAGAGAGCACACTTCAAAAACTATTATGAAATGAAAAGGTTTGTGAATGAGCGAGAAATTCTGTGCAGAGATCACAGGAGATCGATGTTTTTTATCAACAAAGAAATACAAGAGCTTCAAAAGACGTTGATGGACATAAACCTGATAAGCGGATATTGTCACGAAGCCTATGCTGCTCATCTGAGATCAGTGAGTATTGCCTTTTCAACTTGTAAAGAAACCAAGAAAGAAAACACATGTGGTAATATTGACTTTAATGTTGAAAGCGGTGACTCAGCGAAATCCAAACGCATGTTTAGCCAGAAGCATAATGGTTTGGGTGATGAAACCTCTGGTGATTGTGAGAGGGATCTGTCAGAAGTCAAACAGCATTCACTGACTCTACAAACGTATAAAAAAGGCAGCACTAATAATTACATTTCACCACATAGGGATTACTTAAAAGCCTCATTGTCTCATTTTGAGTTATCCTCAAGGGAATGCAATGAAAAAGATGAGGATAAAAGCGATGGATATCCTCAGAAGGCTTTGCCCAAGAGCCCTTCATATATCGCAAAGACAGATCTGAAGAGCAGTTCCTCGACTCCTAGACATTTCACCCTTCACAGAGGAGCAAAACAAGTGCATCAAAGACGACAAAAAGTCACCCTTCATAAGAGTCCTGCTCCAGGAATAAGGAGCCCTTCGCATGACCAGGATTGTTGTTATTATATGGGTATACAGCAGCAAGACCAAGACAGCAAGACATTGTCAAGATACTTACAAAGTAAAGACGGCATGGACAAAATCAGGGGTCACATATCAAAAGCGGCCATTAAGCACAGCCTCGATCTGCTCATAAAAGAATACAGTCGTTCTCAAAATGCTGATATAGTGAACAACAGCAAGCAGAGCGGTTTGCAGGAAAAGTATCCTGAATCACTGCTGTCATTCACTTTAGATGTGAGCAGAAGCGGCATCAGTATGAGGAGCCCTTCCTTCATTTTCTGGGTTTTATTACTCGTGGACGTTTCTCCATCTGGTTATGTCAAAACCAATGAAGAAGAAAACATGCCGCAGATAGAGAAATATTCTGACATGAATGTGTTTGTTGCTGTGGGAGATGGAGTAAAGACGCTGATAGTGATGGAGGGAGATTCTGTCACTTTAAACACTAGTGTTACTGAAATAAAAACATATGATACGATATCGTGGATGTTTGGAAAAGAGTGTATCGTTGAAATGAATGAAGCAGCTGGAAGATTCTTTATATCTAAGGGTGAGAGATTCAGAGATAGACTGGCGCTGGACAATCAAACTGGATCTCTCACTATCAAAAACATCAGAACTGAACACACTGGAGATTATCAGCTACATATCCGTAGCAAAAGTGAAACAACAAAGAGATTCAGTGTTACTGTCCGTGTAAAATTATTCAGTAAATGTAAATTTACAAACCTCAGAACCATCGATGGTCTCGAGCAAGTTAATGGATTAAATGGCATTATAGATGCAAAATGGAAAAATGTGATCAAACTGAATGATCATACTGGAGATCTCACCATTAGAAACATCCAAATCCAACACTCTGGAGACTATGATTTGGAGATCAACAACAGCACCACCATCTTACACAGGAAGTTCAATATTGCGGTTAGTGACCTCCCTGAGAATTCACATTGGAACACAACTGGTCCAGTGTTAGCAGCCGTGATCGTGATCGTAATTGTGATCGCGTTCATAATCTGTCTTATGGTCAAGACGGGTAAGATTGAAGTATCCTGGTGCCACAAGAATGATGGTGGTACAGACTCATCGAATGATGCAATGCAGGAATTGAACAGAGATGCTCAACAGCAGTAGTTCATAGTTGGTACACATTAATAGCGTTTGAAAATCAACCATTCTAAAATGAGTTAAGGCTTTTATTTGATTTGGCATGAATAGCATTAGTAGAGAAACATGCTTTCATCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32688 lncRNA upstream 139744 8682707 ~ 8683005 (+) True G28909
TU32684 lncRNA upstream 148548 8673758 ~ 8674201 (+) True G28905
TU32683 lncRNA upstream 149286 8673221 ~ 8673463 (+) True G28904
TU32650 lncRNA upstream 206214 8616221 ~ 8616535 (+) True G28872
TU32645 lncRNA upstream 216164 8606314 ~ 8606585 (+) True G28867
TU32714 lncRNA downstream 16890 8861235 ~ 8861910 (+) True G28933
TU32734 lncRNA downstream 38051 8882396 ~ 8882600 (+) True G28947
TU32754 lncRNA downstream 51117 8895462 ~ 8896242 (+) True G28955
TU32758 lncRNA downstream 61827 8906172 ~ 8906381 (+) True G28959
TU32767 lncRNA downstream 78138 8922483 ~ 8922685 (+) True G28968
CI01000004_08806791_08812203.mRNA mRNA upstream 10187 8806791 ~ 8812562 (+) True CI01000004_08806791_08812203
CI01000004_08746864_08765484.mRNA mRNA upstream 56844 8746484 ~ 8765905 (+) True CI01000004_08746864_08765484
CI01000004_08736175_08742487.mRNA mRNA upstream 78362 8736175 ~ 8744387 (+) True CI01000004_08736175_08742487
CI01000004_08730011_08731219.mRNA mRNA upstream 90240 8730011 ~ 8732509 (+) True CI01000004_08730011_08731219
CI01000004_08693419_08703448.mRNA mRNA upstream 118593 8693419 ~ 8704156 (+) True CI01000004_08693419_08703448
CI01000004_08866163_08873681.mRNA mRNA downstream 21689 8866034 ~ 8873796 (+) True CI01000004_08866163_08873681
CI01000004_08875722_08877149.mRNA mRNA downstream 31377 8875722 ~ 8877507 (+) True CI01000004_08875722_08877149
CI01000004_08947119_08949558.mRNA mRNA downstream 102774 8947119 ~ 8949644 (+) True CI01000004_08947119_08949558
CI01000004_08976512_08980033.mRNA mRNA downstream 131909 8976254 ~ 8980958 (+) False CI01000004_08976512_08980033
CI01000004_08987501_08991239.mRNA mRNA downstream 142813 8987158 ~ 8991469 (+) True CI01000004_08987501_08991239
TU32637 other upstream 223146 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 371522 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 1166366 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 2248328 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 2320662 6470028 ~ 6502087 (+) True G28302
TU32792 other downstream 132093 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 132093 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 1653031 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 2792906 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 2820428 11664773 ~ 11665473 (+) False G31611

Expression Profile