RNA id: TCONS_00002874


Basic Information

Item Value
RNA id TCONS_00002874
length 1162
lncRNA type read_through
GC content 0.40
exon number 3
gene id XLOC_000656
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51694751 ~ 51717215 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGACACGTTTGGTCTACCAGATGCGaagatttgttgttgtttttttcctcctCGATTATTCGTAATTTAATTGAGACGTGACCCAGACACATATTATGGGACTGAAAATGAGCTTCTTCTTCTTGCTGACGACTGAGAGGAAGGACAGGCCATCGCGACAGcctgcggaagaaagtgaaacagATTACCTTTGCACAGATGCTGGCAGCGCTGACGATTGGGAATAAGGAATCAGCTTTGGGACGGACTGTGACCTCCACACCGGGGAACCGTTGCGACAGCTTGTCCTGATACTTCTCTGCTGGACCCACAGTGTCCACAAACACCTGAGAGGAAAAACAGACTCGTCATTATGGGCCATTTCTGCGGTTTATCATGCAGGTTTGCTTTGTCTCAATCACCTCTTTGAGCTGCACCCCAGAATCCAGAGCATACTGCACCAGGCCAATCGCTGCATCGTGTGAAAGGGCATTCAGATTGTATTTTGCtctgaaaaaataataacaacaaaacctTGATGTCAGATATACttgcagctatttttttttattctatattctATACAGCGAGGAAAATAAGtactgaacatgtcatgtttgTTTCCTGGAAATAACATTTCTAAAGGAGcttttgacatggaattgaaccagattacGATAAAAACCAGAACAATGTTAACATAAAaagaaacagacaaaaaaaaaatctgaaatattttgtgtaataacaatggaatgacacaaggagaaattACTGAACTATTAAAACGTATTtaacactttatataaaaggcttttgttggtgatggcagcttaaagacgcctctcatatggagaatgaagtcacatgaattgctcaggcatgagtttttcacagacttcaacagagtataAAAatattgatggttctgtgggtctcgtctattaattttgatctttattttgtattctctattggattcaagtcaggtgattggctaggccattccacagttttattttctttctctgaaagcatttgcgagtctccttggctgtgttttggatcattgttttgctgaaatgtccaccctggtttcatcttcatcatctgctaatgtagatgttggactgaagcagcgaatattcatttacactgacgaTGGTTGCTAATAAactag

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001114 lncRNA upstream 213729 51479146 ~ 51481022 (+) False XLOC_000652
TCONS_00001098 lncRNA upstream 621623 51066816 ~ 51073128 (+) True XLOC_000645
TCONS_00001095 lncRNA upstream 652419 51039558 ~ 51042332 (+) True XLOC_000644
TCONS_00003160 lncRNA upstream 676200 51015858 ~ 51018551 (+) True XLOC_000643
TCONS_00001091 lncRNA upstream 710812 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00003161 lncRNA downstream 35763 51752978 ~ 51826020 (+) False XLOC_000658
TCONS_00001121 lncRNA downstream 35910 51753125 ~ 51826020 (+) False XLOC_000658
TCONS_00001122 lncRNA downstream 106509 51823724 ~ 51826020 (+) False XLOC_000658
TCONS_00003162 lncRNA downstream 106521 51823736 ~ 51826020 (+) False XLOC_000658
TCONS_00003163 lncRNA downstream 106524 51823739 ~ 51826020 (+) False XLOC_000658
TCONS_00001118 mRNA upstream 67622 51615672 ~ 51627129 (+) True XLOC_000654
TCONS_00001117 mRNA upstream 78646 51615506 ~ 51616105 (+) False XLOC_000654
TCONS_00001116 mRNA upstream 148834 51537250 ~ 51545917 (+) True XLOC_000653
TCONS_00001115 mRNA upstream 169665 51496862 ~ 51525086 (+) True XLOC_000652
TCONS_00001113 mRNA upstream 169667 51479128 ~ 51525084 (+) False XLOC_000652
TCONS_00001120 mRNA downstream 4636 51721851 ~ 51729862 (+) True XLOC_000657
TCONS_00001123 mRNA downstream 109831 51827046 ~ 51829291 (+) True XLOC_000659
TCONS_00001124 mRNA downstream 178932 51896147 ~ 52086496 (+) False XLOC_000661
TCONS_00001125 mRNA downstream 186198 51903413 ~ 51961732 (+) True XLOC_000661
TCONS_00001127 mRNA downstream 412998 52130213 ~ 52137313 (+) True XLOC_000662
TCONS_00001119 other upstream 11133 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 229169 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 621644 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 840273 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001079 other upstream 1562742 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001126 other downstream 412949 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001154 other downstream 1282617 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 1647295 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 1670550 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 2335889 54053104 ~ 54061210 (+) True XLOC_000705

Expression Profile

//