RNA id: CI01000004_10271350_10272027.mRNA



Basic Information


Item Value
RNA id CI01000004_10271350_10272027.mRNA
length 1009
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000004_10271350_10272027
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10271198 ~ 10272206 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTTGGGTTATTTAGGGCAAGACAGAAATATTTTGAATCTGGTGACAAAGCAGGCAAGTTTCTTGCAAGCTATATTAAACAAAGAGAAACGTCATCTCTTATTCCCTCTATTAAGTCTGCTGAAGGAATAATTGTTACCAAGTTAGAGGATATTAATTAAGTTTTTAGGAAATTTTATATGGATTTATACACATCTACTTGTGAGGCAGGGGATAGTGATATAAGGGACTTTTTGGACTCATTGAATTTACCAAAGCTGACAGAGGAACAGAAAAGTGGACTTGACTCCCCCAATACAATTGAAGAAATTATAGAAGTAATCAGGTTACCCTCCTCTAAGTCTCCAGGGCCAGATGGATTTACTGCAGAGTTTTTTAAGTGTTATGCACTTGAGGTATCTCCACTGCTGCTGAATTTGTATAATGAGGCAATGGAGAAAGAAGAGCTACCATCTACATTGACGCAGGCATTAATTACTCTTATCCTTAAAAAGGGCAAGGACCCGGCTGATTGTAAGAGTTATCGTCCAATTTCTTTAATTCCTGTGGATGTTAAAATACTTTCTAAAATTTTGGCAAACAGGTTGGACAGGCTTATTACCTCCTTAGTGCATGGGGATCAGGTGAGTTTTATACATGGTAGAAATGGGGCAGATAATATTAGGAGACTTATTAATATTATGTGGTCAATGGCTGACACCGATGGTCCAGTGACAGCAATCTCAATGGATGCGGAAAAAGCTTTTGACTGTGTTAAGTGGGAGTACTTATTTGAGACATTAAATTTTTGTGGGTTTGGGAATGTTTCTCAAATGGATACAATTACTGTATACGCGACCCCAAGCAGTACAGACTAATGGACAAATTTCTTCTTATTTTACGCTGGCAAGAGGGACCCATCAAGGATCTCCATTATCTCTGTTGCTGTTTTGCTTGGCTTTAGAACCTCTGGCAGCAGCTATAAGAGCAAGTACAAGCTGGGGTTTCTGTGGAGGGAACAGTGCATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35074 lncRNA downstream 66179 10196434 ~ 10205019 (-) True G30986
TU35072 lncRNA downstream 74043 10184093 ~ 10197155 (-) False G30986
TU35058 lncRNA downstream 101315 10162961 ~ 10169883 (-) True G30981
TU35044 lncRNA downstream 133551 10137283 ~ 10137647 (-) True G30970
TU35019 lncRNA downstream 201495 10063129 ~ 10069703 (-) True G30952
TU35109 lncRNA upstream 13004 10285210 ~ 10286174 (-) True G31014
TU35137 lncRNA upstream 82273 10354479 ~ 10371232 (-) True G31042
TU35141 lncRNA upstream 87345 10359551 ~ 10359791 (-) True G31046
TU35151 lncRNA upstream 113093 10385299 ~ 10385770 (-) True G31056
TU35156 lncRNA upstream 121120 10393326 ~ 10426345 (-) True G31060
CI01000004_09779903_09780536.mRNA mRNA downstream 490320 9779235 ~ 9780878 (-) True CI01000004_09779903_09780536
CI01000004_09754664_09774588.mRNA mRNA downstream 496125 9753467 ~ 9775073 (-) True CI01000004_09754664_09774588
CI01000004_09703159_09711600.mRNA mRNA downstream 559200 9701926 ~ 9711998 (-) True CI01000004_09703159_09711600
CI01000004_09639469_09656035.mRNA mRNA downstream 615163 9638825 ~ 9656035 (-) True CI01000004_09639469_09656035
CI01000004_09616639_09622200.mRNA mRNA downstream 648538 9616639 ~ 9622660 (-) True CI01000004_09616639_09622200
CI01000004_10290550_10295288.mRNA mRNA upstream 17657 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10436514_10438365.mRNA mRNA upstream 164293 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10458668_10465442.mRNA mRNA upstream 186456 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10553379_10573352.mRNA mRNA upstream 280831 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10619819_10627261.mRNA mRNA upstream 346813 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
TU34309 other downstream 864277 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 1913071 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 1913071 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2305698 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 3639291 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 474231 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 1135259 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1504313 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 2103962 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 4278594 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile