RNA id: TCONS_00013067


Basic Information

Item Value
RNA id TCONS_00013067
length 6789
RNA type mRNA
GC content 0.54
exon number 40
gene id XLOC_006791
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36053985 ~ 36134401 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGTCGCAGACCCTGCAGATCCTGCGACAGGGCGTGTGGGCGTCGGTGACGGGCGGATGGTACTACGACCCCCACCAGAACACCTTCGTGAACGCTCTTCACCTTTACCTGTGGCTGCTGCTGCTCTGCCTCCCGTTCACGCTTTACATGGCCTTGCCTCCGACCATGGTGATTGTGGGAATCTACTGCGGGGTGATTGCAGGTATGTTTGTGCTGCTGAAGGCAGTGAATTATCGCCTGCACACCGCGCTGGATGAGGGGGAGGTGGTGGAGCTGCGGGCCAAAGGCAGCGAGGGCCGGGGCCAGGGGGCGGAGCGCCAGCGTGAGGGCACCAGCACCCGGCAGGAGGACTCAAACGGGCCTGGggatCCAGGGGGTGGAATAGAGATGTCTGATTTTGCACGGGATGAGACGCCACCGGTCGACTGCAGTTCACGCAACTCTTACGTAGGAATGGACTCCAGCCATCAGGTGTGTGTTGGAAAGGCACCCGATGACATCAGTTTGAGTTTTTTATTGTCATTTTCACACACTCTGCTATGTCTCTTTCACTCTTTAGATTTGATGTCGGACCCAAAGATGTTCTGCCTTGTCTCCAATGACTCTTTTGCCTCCATGCAGCCATCAACCTCATTGGCACAGGACCTTTATGGCTCCACCCCCCACCCTTTCAGTCAGTCCTTGTCCTCCTGTGACACAGAAATTACTGCCCATCTTTCAACTCACTCACAGTCTTTCCGAAAAGAGTCGTCTCGACCAAGAGGATTGCCTCGAACCTCAAGTTCTGCGGGATCTGCTTTTCCGGATCCTTCTCTGCCTGAGTTCAGCCTGTACCCTCCACCTCGGAGGGGAGGACTTGATCCTGTCTGCGAAATGGATTCGTCTGTGTCCCGAGAGACAGGGGAAGGAGAGTGTGCTGGGGAAGGGGGATCTGGGCTGTACCGTTCTGAGGGTGTTCAGGGGGGTTGTGAAAGGACAGGTGGACACAGTGCCGAAAGTTTGCGTAGTTTAAGCACACGCAGTAGTGGCTCCACTGAGAGCTATTGCAGTGGGACAGACCGGGATACCAACAGTACCCTGAGCAGCTTGCATAGCGAACAGACCAGCTCCACACATGTGGAGAGTCTGCTGTCTCTCTCCGGGGACGAGAAGGTGAATGCGGGACATGCAGATGCACGTAACTCTAATGTGGCCTCGGGGGAGGCTAATAAAAACCCCCATGCCAATGAACTTGCCATCAAATTGCCCACCGACGATCCTCCCAAATCCCTGAACTCTGAGAGTCAACAGGGAGAGGGAACTGTGGAGGCGACATCAAGGACTAGTGCAGATGTCTCTGCTGGCCACCAACACCAGGAGACCGAACCAGATAAAGTGCGACCTAAAACGGTCAACCTTGTTCACCGGGCTGCCTCCTCGTCTGCTGCCACCCGTAGTGGCCGGCGGCGAAATGGTAAGCAGCGCGCGAGCAGCTTTGATGCCAGCAGGCATCGGGAATACATCTGCGGACGTGGCATGGCAAAGCCTCGCTCTGCAGTTTTCATGAAAGGAGAGGAAGACTCCAGTGATCAGAGTGAACTCAGTTGTGCCTCCAGCCTTCACTCCACCCACCAGCTCAGCACAGACTCATCATCCAGCACACCACACTCCTGCCCCTCTCCAGAGGAGCGTCGCCGCCCCTCGCTGCGGGCCAAAATGCATGGCATGCCAACCAGCGGTCAGAAGGTTAAAGAAAAGGAACGGCAGAAAGACAAGGAGAAGGGCAAGCGCAGAGCTTCACGACGCACTCCAAGTACAGGCAGTGCCAAAACTCACGCCCGGGTCCTGAGCCTGGACAGCAGCACTACTGCTTGCCTTAATGACCCCCATCATTTGGGGGCACCAGCAAGTTCCAGACCTCTTACCACCTCCAAGTCGGACCTAGAGGCAAAAGAAGGGGAGGTTTTGGATGCGGCATCCCTGTTGGGAAGAGCTTCTCAGCTTGAATCAGTGACCCGGTCTAGAAACAGTCTGCCCTGCCCCATCTCCCTTAGTCACACACAAGACGCAATGGCAGGATCACGAGTCACGTTTCGCCGCGAGCGTAGTACGTTTCGTCGGCAAGCAGTGCGTCGACGGCACAACGCAGGAAGCAACTCCACACCCCCTGCTTCTCTCATCGGATCCCCTCTCAGTCTGCAGGAGGCTCTGAGTCAGGTCTCTCAAGCTTCAGGGTCACAGGTCAGAGGTCAGCCGTCCCGCACGCCGTCTCAGGTGACGGTGTTGAGCACTAGCGCCTCCCTGCTGGTCAGGAATGGAAGTGCGCAGCTGGAAGGCTGTCCGGATAAAGCGTCGACTGTTGGAGTCGCCAGCCTGCAGGATGAGTTCGGGAAACTGACCCCGCCTCTCTATGAGGTCGGAGGATGTGACATGTCCCTGGTGAACTTTGAACCTGCAACTAGACGAGCCTCCAACAACCTCTGGGAAACAGACTCTCACCTCTCCAGTTCTACCTCAGTTCGCTTTTACCCTCATGACCTGTTCTCGTTTCCTCAGATGCGTCTAAATCGGCTGCTGTCCATGGACCCAGAGCTGTTGGAGCAGCACGATGTGGACGGCAGTCCTGACCTGCAGGAGGACTCAACACATAATCACCCACACACGCACGCGCTCGCACACAAAACCAAGCAGTACTACCGCTTCTGGCTGCTGCCGTACCTGTGGGTCGGGCTGCACTTTGACAGACTCACTCTACTGGCCCTTTTCGACAGGAACCGGGAGGTTCTGGAGAACTTGCTTTCAGTGGCTCTGGCGGTTCTTGTGGCCTTCCTGGGTTCAGTGCTGCTAGTTCATGGCTTCTTTACTGACATTTGGGTCTTTCAGTTCTGCCTTGTTATCGCCAGTTGCCAGTACTCATTGCTGAAGAGCGTCCAACCAGACTCTTCATCCCCTCGACATGGTCACAATCGTATCATCGCCTACAGCAGGCCTGTGTATTTCTGCCTGTGCTGTGGGCTGATCTGGCTGTTGCATTATGGGAGCGTAAACTGCAGCACCAATGCAGTGTCTCTGTATGGAGTCGCTCTCACCAGCTCCGTCCTGCTGTCCCAGGCTCGGGATCTCCTCATCGtGTTCACCCTGTGCTTTCCCGTCATCTTCTTCATCGGGCTGCTCCCTCAGATTAACACTTTCGTCATGTACCTGCTTGAGCAGCTTGACATTCACTTCTTCGGAGGAAATGCATGCACCAGTCTGCTCTCAGCTCTCTACAGTGTTCTGCGCAGCATCGTGACCATCGCGATGCTCTATGGGTTCTGCTACGGCGCCCTAAAGGACTCATGGGATCCTCAGCACATTCCTGTGCTTTTCTCAGTGTTTTGTGGGCTGTTGGTTGCTGTTTCATACCACCTCAGCCGCCAAAGCAGTGACCCCTCTGTTCTCATTTCATTAGTGCAATCAAAGGTCTTCCCCAATGTAAAGGACAAAAACCCGGAGGATCCACTTTCCGAGGTGCAGGATCCTTTACCAGACAAACTTCGCAGCTCTGTGAATGAGAGACTGCAGTCAGATGTGATTGTATGTGTCGTCATTGCTGTCCTGTATTTTGCCATTCATGTCAGCACTGTTTTCATCGCCTTACAGCCATTTTTAAGCTATGTTCTGTACGGTCTAGTCGGCTCGGTAGGGCTGTTAActcactacctactgccccagaTGAGGAAGCAGTTGCCCTGGTACTGTTTTTCCCACCCGCTGCTCAAAACCAGAGAGTACTATCAGTTCGAAATCCGGGGTGCTGCCCATGTCATGTGGTTTGAGCGCACTCATGTGTGGCTGCTGTTTGTGGAGAAAAACATCCTCTATCCGCTCATTGTGCTCAATGAGCTGAGTGGCAGCGCACAGGAGCTCGCCGGCCCCAAAAAACTCAACACAGAGATCGGGGCTCTGGTAATAACCATCGCTGGACTGAAGCTGCTACGTTCTTCCTTCAGTAGTCCAACATATCAATACGTCACTGTCCTCTTTACGGTCCTGTTCTTCACCTTTGATTACCGCCAGTTCTCTGAGACAATGCTGCTGGACCTTTTTATTATGTCCATCATTTTCAGCAAGTTATGGGAGCTCTTTTATAAGTTGAAGTTCGTTTATACCTACATCGCACCATGGCAGATTACCTGGGGCTCTGCCTTTCATGCCTTCGCCCAGCCGTTTGCAGTGCCACACTCTGCCATGTTGTTTGTGCAGGCCATTGTGTCTGCTGTGTTCTCCACTCCGTTAAACCCATTTCTTGGTAGTGCCATTTTCATCAGCTCTTACGTACGTCCTGTGCGCTTCTGGGAGAGAGAATACAATACTAAGCGAGTTGATCACTCCAACACCAGACTTGCTTCGCAGCTTGACAGAAACCCAGGTTCAGATGATAATAACTTAAACTCCATCTTCTATGAGCATTTGACGCGCTCGCTCCAGCACTCTCTGTGTGGAGATCTGCAGCTGGGCCGCTGGGGAAACTACAGCACCGGAGACTGCTTCATCCTGGCGTCTGATTACCTCAACGCTCTTGTTCACCTCGTCGAGATCGGCAATGGCCTCATTACCTTCCAGCTCAGAGGACTGGAATTCAGAGGGACATATTGCCAGCAGAGGGAGGTAGAGGCGATAACAGAGGGAGTGGAAGAGGATgaaagctgctgctgctgcgaGCCTGGTCATCTCCCCCATCTGCTGTCCTTTAACGCTGCCTTCGGCCAGCGCTGGTTGGCCTGGGAGGTTCTGGTCACTAAATACGCCCTGGAGGGCTACAGCATCACCGATAACAGTGCCGCGTCTATGCTGCAGGTGTTTGATCTGCGGCGAATCCTCACCACCTACTACGTAAAGggcATCATTTACTATGTCATTGCCTCTCCTAAACTGGAGGAGTGGTTGGCGAATGAAGGTCTACTGGAGGGCTTGAAGAGCTGCGGAGAGAGGAATTACGTTGATCTGGATCCGACTTTTAACCCTAATATTGACGAAGATTATGACCACAGACTGGCAGGGATCTCCAGAGACAGCTTCTGCTCGGTCTACCTCAGCTGGATCCAGTACTGCAACTCTCGAAGAGAGAAGCCACTGGACAGTGAAAAAGACTCTCTGCTGGTGTTGTTGTGTTATGGTCTGTGTGTTTTGGGAAGGAGAGCTTTGGGAACTGCATCTCACCATATGTCCAGCAATCTGGAGTCATTCCTGTATGGGCTGCATGCCTTGTTTAAAGGTGATTTCCGGATCTCGTCTGTGAGAGATGAATGGATCTTTACAGACATGGAGCTGCTGAGGAAGGTGGTTGTTCCGGGAATTCGCATGTCACTCAAACTGCATCAGGTGAGACTCATCTattcccccccattgtgtaaagcaaaagcgctatataaatgtaacaaattattattattattaatattattattattattattagtgtCCATTTCTTCGCACGAGCAGACACTGGGGGATCCGGCCTGGCGCAATGCCGTCCTGTCCAACTCTCCCTCTCTGCTCGCTCTCAGACATGTGCTGGATGAAGGGACCAATGAGTACAAGATCATCATGCTGAACAGACGCTACCTCAGCTTCAGGGTCATAAAGGTGAATAAGGAGTGTGTTCGTGGCCTGTGGGCAGGACAGCAGCAGGAATTGGTGTTTTTACGAAACCGAAACCCGGAGCGTGGAAGCATCCAGAATGCCAAGCAAGCACTACGCAACATGATCAACTCATCATGCGACCAGCCAATCGGATACCCAATATATGTATCGCCCTTGACAACCTCTTACTGTAATACACACCCCCAGCTGGGACACATACTGGGAGGACCAATCAGCATTGCCAACATACGAAACTTTATTGTCAACACGTGGCACagACTGCGTAAGGGCTGTGGTGCTGGCTGTAATAGTGGCGGGAATGTCGAAGATTGTGATGCGGGTGGTTTGTCGTGTGGCAGTGGGAATTCTGGGAATTCTGGGACAGGAGCAAGTGATTCCCAGCATAGCTCAGGACCCACAGCGCTACACGCGTACACACCACATTCTCTGGGTACGAGTCAGAGTTCTCAGTCAGTTCAGTCTGGTTTGGTTCGTCAGTCTCCTGCGCGTGCGTCTGTGGTCAGTCAGTCGTCCTCGTACCGCCACAGCAGCAGTCGTCAGTCTTCACTGCGCACATCTGTGACTGGTCTGGAGCCCTGCAGACGCTCCTCCAGCAGCCAGCTCTCGCTCCGCACCCTGCCCACCTCCCTGCAGCTCCGGCTGGGAACCAACTCCTCCATCGCCAACCCCGAGCCCCCTGGCCCCTCCAGCTCCCTCTCCGCTCACTCCATCCCGCCCTGCAAACGACACGCACACACGCTCGCAGGCCTGCTGGGAAACGAGGCCTTAGTGCTGGGGACGGACATCCATCCTCACCCCCACCACCACCTCCACTACATCCACCATCACCATCACAACCCCTCGCTGTCATGCCTGAGGAGGGACGACATCTCCTACAGAATTGTGGATGTGAGTCAGGTGTTGGATGTGACAAATCATCCTAAGAGGAAGGAGCTGGTGTGGCCTGATGAAAGCATGAGATTGAGGTCTGGACGTAACTTTTGGAGAGAGTGGACTCCGCTAGAGGGCATGGAGGGTCACGTGGTTCATCGTTGGGTGCCTTGCAGTCGTGATCCGGTTAGCCGGTCTCACATTGATAAGACCATCCTGCTGGTCCAGGTGGATGATAAACTGGTTCCCATTATAGAAACAGGAGTGATTGAACTGGGTGCAGAGGTTTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081113-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PCNX1 (pecanex 1).

Ensembl:

ensembl_id ENSDART00000015664

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013872 lncRNA downstream 129445 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 527524 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013869 lncRNA downstream 765492 35205297 ~ 35289437 (-) False XLOC_006774
TCONS_00013080 lncRNA upstream 187047 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013088 lncRNA upstream 395913 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 397243 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 434630 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 453453 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013064 mRNA downstream 4602 36039676 ~ 36050327 (-) False XLOC_006790
TCONS_00013065 mRNA downstream 4626 36045321 ~ 36050303 (-) True XLOC_006790
TCONS_00013063 mRNA downstream 5921 36037970 ~ 36049008 (-) False XLOC_006790
TCONS_00013062 mRNA downstream 20347 35995238 ~ 36034582 (-) True XLOC_006789
TCONS_00013061 mRNA downstream 69157 35984621 ~ 35985772 (-) True XLOC_006788
TCONS_00013071 mRNA upstream 805 36135122 ~ 36141486 (-) False XLOC_006792
TCONS_00013073 mRNA upstream 30322 36164639 ~ 36184701 (-) False XLOC_006793
TCONS_00013074 mRNA upstream 41455 36175772 ~ 36184476 (-) True XLOC_006793
TCONS_00013075 mRNA upstream 62461 36196778 ~ 36264861 (-) True XLOC_006794
TCONS_00013076 mRNA upstream 177577 36311894 ~ 36319308 (-) True XLOC_006795
TCONS_00013058 other downstream 92463 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013051 other downstream 212340 35826667 ~ 35842589 (-) True XLOC_006781
TCONS_00013045 other downstream 462552 35592242 ~ 35592377 (-) True XLOC_006779
TCONS_00013041 other downstream 594998 35430544 ~ 35459931 (-) True XLOC_006776
TCONS_00013038 other downstream 684245 35370569 ~ 35370684 (-) True XLOC_006775
TCONS_00013072 other upstream 1099 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013079 other upstream 186774 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other upstream 187114 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013082 other upstream 264943 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013090 other upstream 396103 36530420 ~ 36535072 (-) False XLOC_006800